erinhwilson / promoter-id-from-rnaseqLinks
Computational framework to identify promoter sequences from RNA-seq datasets
☆10Updated last year
Alternatives and similar repositories for promoter-id-from-rnaseq
Users that are interested in promoter-id-from-rnaseq are comparing it to the libraries listed below
Sorting:
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- ☆31Updated 4 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Comprehensive and scalable differential splicing analyses☆17Updated 4 months ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated last week
- pathway based data integration and visualization☆41Updated 4 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆93Updated 2 months ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 weeks ago
- Python package to analyze DNA methylation data☆43Updated 8 months ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 3 weeks ago
- ☆58Updated 3 weeks ago
- visual analysis of your VCF files☆36Updated 2 years ago
- A guide to running MaxQuant in Linux☆33Updated 5 years ago
- Transcription Factor Enrichment Analysis☆35Updated last month
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆60Updated 7 months ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- A network-based approach for exon set enrichment☆15Updated 3 weeks ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 5 months ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Updated 5 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆29Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆22Updated 2 weeks ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- Ultra-fast 5' and 3' demultiplexer☆27Updated last year
- Predicting gene expression levels from genomic sequences☆53Updated 5 years ago
- ☆15Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- BEAVR: A Browser-based tool for the Exploration And Visualization of RNAseq data☆25Updated 3 years ago