erinhwilson / promoter-id-from-rnaseqLinks
Computational framework to identify promoter sequences from RNA-seq datasets
☆11Updated 2 years ago
Alternatives and similar repositories for promoter-id-from-rnaseq
Users that are interested in promoter-id-from-rnaseq are comparing it to the libraries listed below
Sorting:
- A script to make downloading of SRA/GEO data easier☆33Updated 2 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated 2 months ago
- ☆33Updated 5 years ago
- visual analysis of your VCF files☆38Updated 3 years ago
- pathway based data integration and visualization☆46Updated 10 months ago
- Comprehensive and scalable differential splicing analyses☆17Updated last month
- ☆84Updated 4 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated last month
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆14Updated 8 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆28Updated last year
- The Zavolab Automated RNA-seq Pipeline☆35Updated this week
- Identifying genome-wide translated open reading frames using ribosome profiling☆24Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 5 months ago
- Python package to analyze DNA methylation data☆44Updated 3 weeks ago
- Merging paired-end reads and removing adapters☆46Updated 2 months ago
- tspex: tissue-specificity calculator☆36Updated 2 years ago
- A guide to running MaxQuant in Linux☆35Updated 5 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 2 months ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆22Updated 6 months ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆29Updated 7 years ago
- Metagenome analysis using the Kraken software suite☆36Updated 3 years ago
- A Python library to visualize and analyze long-read transcriptomes☆65Updated last week
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆45Updated last month
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆59Updated 11 months ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- alternative splicing analysis pipeline☆20Updated 4 years ago
- EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence☆33Updated 2 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆59Updated 11 months ago