erinhwilson / promoter-id-from-rnaseq
Computational framework to identify promoter sequences from RNA-seq datasets
☆10Updated last year
Alternatives and similar repositories for promoter-id-from-rnaseq:
Users that are interested in promoter-id-from-rnaseq are comparing it to the libraries listed below
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- ☆25Updated 2 weeks ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆20Updated last year
- visual analysis of your VCF files☆31Updated 2 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- Benchmarking long-read RNA-seq analysis tools☆26Updated this week
- ☆15Updated last year
- Comprehensive and scalable differential splicing analyses☆14Updated this week
- ☆6Updated 4 years ago
- ☆30Updated 4 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 7 months ago
- Simple library/pipeline to generate and handle Hi-C data.☆37Updated 3 months ago
- ☆17Updated 10 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆16Updated 4 months ago
- Metagenome analysis using the Kraken software suite☆30Updated 2 years ago
- off-targeting assessment of Cas9 gRNAs☆13Updated 3 years ago
- Digenome-toolkit ver2.☆16Updated 3 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆26Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 5 months ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆14Updated 2 years ago
- ☆30Updated 8 months ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆42Updated last month
- Long-read Isoform Quantification and Analysis☆39Updated last month
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆13Updated 3 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- ☆34Updated 5 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆41Updated this week