erinhwilson / promoter-id-from-rnaseq
Computational framework to identify promoter sequences from RNA-seq datasets
☆10Updated 11 months ago
Related projects: ⓘ
- Comprehensive and scalable differential splicing analyses☆13Updated 3 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆19Updated last year
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆19Updated last year
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆14Updated last year
- iCodon customizes gene expression based on the codon composition☆13Updated 10 months ago
- A script to make downloading of SRA/GEO data easier☆29Updated 11 months ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆18Updated 2 months ago
- ☆33Updated last week
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- ☆14Updated 2 years ago
- off-targeting assessment of Cas9 gRNAs☆12Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆40Updated 4 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆22Updated 2 weeks ago
- RiboPlotR package for Ribo-plot☆13Updated last year
- On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs☆13Updated last month
- Modelling insertion efficiency for Prime Insertion Experiments☆13Updated 5 months ago
- Interactive multiscale visualization for structural variation in human genomes☆60Updated last month
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆13Updated 2 months ago
- Visualization toolkit for differential splicing events☆16Updated last week
- Comparison of Adaptive Immune Receptor Repertoires☆25Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆26Updated last year
- The Zavolab Automated RNA-seq Pipeline☆33Updated 3 weeks ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆26Updated 6 years ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 3 years ago
- A genome browser in your Jupyter notebook☆26Updated 5 months ago
- alternative splicing analysis pipeline☆17Updated 3 years ago
- ☆25Updated last year
- ☆20Updated 4 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆20Updated 4 months ago
- StructureFold2☆12Updated 2 years ago