erinhwilson / promoter-id-from-rnaseq
Computational framework to identify promoter sequences from RNA-seq datasets
☆10Updated last year
Alternatives and similar repositories for promoter-id-from-rnaseq:
Users that are interested in promoter-id-from-rnaseq are comparing it to the libraries listed below
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated last year
- A script to make downloading of SRA/GEO data easier☆30Updated last year
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- Comprehensive and scalable differential splicing analyses☆17Updated last month
- RiboPlotR package for Ribo-plot☆15Updated last year
- SingleCell Nanopore sequencing data analysis☆59Updated 4 months ago
- Transcription Factor Enrichment Analysis☆34Updated this week
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆16Updated last week
- Tool package to perform in-silico CRISPR analysis and assessment☆25Updated last year
- IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.☆27Updated last year
- ☆15Updated 2 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆18Updated last month
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆20Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆39Updated last month
- Benchmarking long-read RNA-seq analysis tools☆27Updated 2 months ago
- A network-based approach for exon set enrichment☆14Updated last month
- ☆16Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆21Updated 3 weeks ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 9 months ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆17Updated 3 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 8 months ago
- Detection and couting alternative TSS in single cells☆14Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- ☆38Updated 7 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- visual analysis of your VCF files☆32Updated 2 years ago
- ☆30Updated 11 months ago
- direct comparison of circular and linear RNA expression☆22Updated 4 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 3 months ago