erinhwilson / promoter-id-from-rnaseq
Computational framework to identify promoter sequences from RNA-seq datasets
☆10Updated last year
Alternatives and similar repositories for promoter-id-from-rnaseq:
Users that are interested in promoter-id-from-rnaseq are comparing it to the libraries listed below
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆21Updated 3 months ago
- ☆30Updated 10 months ago
- A script to make downloading of SRA/GEO data easier☆30Updated last year
- Comprehensive and scalable differential splicing analyses☆15Updated 2 weeks ago
- Tool package to perform in-silico CRISPR analysis and assessment☆24Updated 10 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆42Updated this week
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆17Updated last week
- Detection and couting alternative TSS in single cells☆14Updated 11 months ago
- Workflow for Nanopore Sequencing of 10x single cell libraries☆19Updated this week
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- Quantification of transposable element expression using RNA-seq☆64Updated last year
- New version of JACUSA -> 2.0☆24Updated last week
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- SingleCell Nanopore sequencing data analysis☆56Updated 3 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 6 months ago
- RNAseq pipeline based on snakemake☆25Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆20Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆37Updated 4 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆26Updated this week
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 10 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 8 months ago
- Transcription Factor Enrichment Analysis☆34Updated 3 weeks ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated last week
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆27Updated last year
- The Zavolab Automated RNA-seq Pipeline☆35Updated last week
- An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM fil…☆11Updated 3 years ago