Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.
☆10Jul 3, 2026Updated 2 weeks ago
Alternatives and similar repositories for TIRmite
Users that are interested in TIRmite are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Nov 29, 2022Updated 3 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 4 months ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆53Jul 3, 2026Updated 2 weeks ago
- ☆122Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 10 months ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- plane sweep filtering genome alignments☆24May 23, 2026Updated last month
- Compute mean telomere length from Whole Genome Sequencing data.☆15Feb 15, 2024Updated 2 years ago
- Improved Phased Assembler☆29Mar 11, 2022Updated 4 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 2 months ago
- genomic variant frequency estimation☆12Sep 7, 2025Updated 10 months ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆11Dec 7, 2022Updated 3 years ago
- A long read simulator based on badread idea☆23Oct 7, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆11Mar 14, 2026Updated 4 months ago
- A Shiny App for Interactive RNAseq Analysis and Visualization☆15May 14, 2026Updated 2 months ago
- Modified TIR-Learner for Rice genome☆12Jun 14, 2019Updated 7 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Jan 25, 2024Updated 2 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Paint genomes with taxa-specific k-mer probabilities☆16Apr 4, 2022Updated 4 years ago
- Study of TE evolution in a population of genomes☆10Dec 11, 2023Updated 2 years ago
- De novo assembly from Oxford Nanopore reads.☆89Jun 29, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- The MafFilter genome alignment processor☆19Apr 10, 2026Updated 3 months ago
- De novo genome assembly for long reads using an overlap graph☆22Jul 3, 2026Updated 2 weeks ago
- defusion☆14Aug 24, 2021Updated 4 years ago
- k-mers and the like☆23Updated this week
- Ploidy agnostic phasing pipeline and algorithm☆50Jan 3, 2024Updated 2 years ago
- assembly evaluation tool☆35May 11, 2022Updated 4 years ago
- Visualise interstrain recombination from environmental samples.☆28Apr 18, 2019Updated 7 years ago
- ☆27Jul 15, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Remove human reads from a sequencing run☆51Jun 29, 2026Updated 3 weeks ago
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 5 years ago
- Rapid discovery of reciprocal best blast pairs.☆10Nov 9, 2024Updated last year
- ☆15Feb 1, 2023Updated 3 years ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 11 months ago
- a GFA toolkit☆13Oct 4, 2024Updated last year
- A fully automated gene annotator from RNA-Seq expression data☆62Jul 1, 2023Updated 3 years ago