Adamtaranto / TIRmiteLinks
Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
☆10Updated last month
Alternatives and similar repositories for TIRmite
Users that are interested in TIRmite are comparing it to the libraries listed below
Sorting:
- Standalone tool and library allowing to work with barcoded linked-reads☆12Updated 5 months ago
- Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map☆10Updated 3 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- ☆24Updated 6 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 7 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 8 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 6 years ago
- Prefix-renaming FASTA records really fast.☆17Updated 11 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- ☆15Updated 7 years ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆15Updated 2 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆9Updated 7 months ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 6 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 11 months ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 5 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- The MafFilter genome alignment processor☆18Updated 3 weeks ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆18Updated last week
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆9Updated 2 years ago
- Better Alignments with Translated HMMER☆21Updated last week
- Genome Assembly 102☆13Updated last month
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- ☆14Updated last year
- Phasing reads with secondary alignments☆18Updated 6 months ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- ☆14Updated last year