Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.
☆10Oct 26, 2026Updated this week
Alternatives and similar repositories for TIRmite
Users that are interested in TIRmite are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ONT-first assembly pipeline☆13Jul 15, 2025Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆17Oct 15, 2026Updated 2 weeks ago
- Similar genome assisted reassembly pipeline for PacBio long reads☆11Dec 7, 2021Updated 4 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Sep 23, 2026Updated last month
- Modified TIR-Learner for Rice genome☆12Jun 14, 2019Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- plane sweep filtering genome alignments☆24Sep 28, 2026Updated last month
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Example of SGTK application for E.coli dataset:☆32Jul 13, 2020Updated 6 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 8 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆59Oct 9, 2026Updated 3 weeks ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- Improved Phased Assembler☆29Mar 11, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The UltraPlexer is a kmer-based tool that allows assigning non-barcoded long-read sequences generated by the Oxford Nanopore Technology t …☆10Aug 16, 2021Updated 5 years ago
- Compute mean telomere length from Whole Genome Sequencing data.☆15Feb 15, 2024Updated 2 years ago
- A Shiny App for Interactive RNAseq Analysis and Visualization☆15May 14, 2026Updated 5 months ago
- genomic variant frequency estimation☆12Sep 4, 2026Updated last month
- ☆124Sep 29, 2026Updated last month
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 5 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Jan 25, 2024Updated 2 years ago
- ☆11Mar 14, 2026Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python3 module for running MUMmer and reading the output☆33Mar 24, 2025Updated last year
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 4 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- De novo assembly from Oxford Nanopore reads.☆90Jun 29, 2026Updated 4 months ago
- k-mers and the like☆22Oct 18, 2026Updated last week
- The MafFilter genome alignment processor☆19Oct 16, 2026Updated 2 weeks ago
- A long read simulator based on badread idea☆23Oct 7, 2022Updated 4 years ago
- assembly evaluation tool☆36May 11, 2022Updated 4 years ago
- A genome assembly assessment pipeline.☆39Jun 5, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Visualise interstrain recombination from environmental samples.☆28Apr 18, 2019Updated 7 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- Paint genomes with taxa-specific k-mer probabilities☆16Apr 4, 2022Updated 4 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- PANPROVA: PANgenomic PROkaryotic eVolution of full Assemblies☆10Jun 14, 2026Updated 4 months ago
- Rapid discovery of reciprocal best blast pairs.☆10Nov 9, 2024Updated last year
- Study of TE evolution in a population of genomes☆12Dec 11, 2023Updated 2 years ago