Alternatives and similar repositories for TransposonUltimate

Users that are interested in TransposonUltimate are comparing it to the libraries listed below

• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆108Updated last month
• alekseyzimin / EviAnn_release
  This is the standalone version of the EviAnn pipeline
  ☆115Updated last week
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆71Updated 2 years ago
• chenlianfu / geta
  ☆82Updated last year
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆81Updated 4 years ago
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆92Updated 2 months ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆58Updated 2 years ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆125Updated 2 weeks ago
• nclark-lab / RERconverge
  Analysis of convergence between organismal traits and DNA/protein sequences
  ☆57Updated 3 weeks ago
• kiranbandi / synvisio
  SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …
  ☆88Updated last year
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆100Updated last week
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆109Updated last year
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆139Updated 3 weeks ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆116Updated 9 months ago
• zhaotao1987 / SynNet-Pipeline
  Workflow for Building Microsynteny Networks
  ☆56Updated 3 years ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆90Updated last month
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆72Updated 3 weeks ago
• mrvollger / StainedGlass
  Make colorful identity heatmaps of genomic sequence
  ☆120Updated last year
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆80Updated last year
• qiao-xin / DupGen_finder
  A pipeline used to identify different modes of duplicated gene pairs
  ☆106Updated last month
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆195Updated 2 weeks ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆104Updated 2 months ago
• fanagislab / GCE
  GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…
  ☆53Updated 5 years ago
• qjiangzhao / TEtrimmer
  TEtrimmer: a novel tool to automate manual curation of transposable elements
  ☆76Updated last week
• yjx1217 / RMRB
  This is an archive version of old RepBase library (v20170127) for RepeatMasker.
  ☆37Updated 4 years ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆92Updated 4 months ago
• xiaochuanle / MECAT2
  ☆71Updated 5 years ago
• YangJianshun / LINKVIEW2
  DNA序列比对结果 可视化展示工具
  ☆54Updated 2 years ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆102Updated 7 months ago