saezlab / networkcommonsLinks
NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein interaction networks by integrating context-agnostic prior knowledge with omics data.
☆30Updated 6 months ago
Alternatives and similar repositories for networkcommons
Users that are interested in networkcommons are comparing it to the libraries listed below
Sorting:
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆45Updated 3 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆59Updated 8 months ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆64Updated last year
- Molecular interactions inference from single-cell multi-omics data☆30Updated 3 weeks ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- Finding the causality in biological pathways☆14Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- A python package for chromVAR☆33Updated 2 years ago
- Multi-omics factor analysis v2☆56Updated last week
- Work with trained factor models in Python☆36Updated last year
- A Python package for gene network analysis☆32Updated 3 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆61Updated 2 years ago
- Geometry-preserving random sampling☆95Updated last year
- Benchmark of GRNs using the GRETA pipeline☆31Updated this week
- scRNAseq integration with triplet neural networks☆41Updated this week
- ☆44Updated last year
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆65Updated last month
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated 4 months ago
- Python client for the OmniPath web service☆57Updated 7 months ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Single-cell multi-omics integration using Optimal Transport☆50Updated 5 months ago
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- Functional Associations using Variational Autoencoders☆43Updated 2 weeks ago
- Code and documentation for the curation of cellxgene datasets☆52Updated last week
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆53Updated last year
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆72Updated 4 months ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Updated 3 years ago