harryhaller001 / keggtools
Library for KEGG pathway enrichment analysis
☆13Updated last year
Related projects: ⓘ
- ☆47Updated 8 months ago
- Python package to perform normalization and variance-stabilization of single-cell data☆21Updated 2 years ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆52Updated 6 months ago
- Interactive applications of stlearn☆15Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆60Updated 10 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆47Updated last year
- bioinformatics plotting and tools☆52Updated 3 months ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆39Updated last month
- Flow & mass cytometry analytics.☆41Updated this week
- Molecular interactions inference from single-cell multi-omics data☆17Updated last month
- Multi-omics factor analysis v2☆34Updated last month
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆40Updated last week
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆38Updated last year
- pseudobulking on an AnnData object☆23Updated last year
- Tutorials for multimodal omics data analysis☆11Updated 2 years ago
- ☆23Updated 3 weeks ago
- Multimodal Data (.h5mu) implementation for Python☆73Updated last week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆49Updated 3 months ago
- ☆19Updated 2 years ago
- ☆37Updated this week
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆55Updated 3 months ago
- ☆40Updated last week
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆28Updated 2 months ago
- Single cell omics biology annotations☆45Updated this week
- ☆40Updated 3 months ago
- ☆28Updated 4 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆56Updated 4 months ago
- ☆31Updated 3 weeks ago
- Reproducing the experiments of the DestVI paper☆17Updated 2 years ago
- Single-Cell Clustering Assessment Framework☆87Updated 10 months ago