Alternatives and similar repositories for keggtools

Users that are interested in keggtools are comparing it to the libraries listed below

• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆60Updated last year
• epigenelabs / inmoose
  InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
  ☆122Updated last week
• genialis / RNAnorm
  Normalization of RNA-seq gene expression
  ☆104Updated 6 months ago
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆56Updated this week
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆84Updated 4 years ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆59Updated 8 months ago
• ma-compbio / Higashi
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
  ☆91Updated 3 months ago
• wckdouglas / diffexpr
  Porting DESeq2 into python via rpy2
  ☆67Updated 2 years ago
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆105Updated this week
• lilab-bcb / harmony-pytorch
  ☆62Updated 8 months ago
• sebriois / biomart
  Python biomart API
  ☆69Updated 2 years ago
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆30Updated 2 months ago
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆115Updated 2 weeks ago
• Novartis / cellxgene-gateway
  Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…
  ☆67Updated last month
• Maarten-vd-Sande / qnorm
  Fast-ish (and correct!) quantile normalization in Python.
  ☆31Updated 7 months ago
• zhoujt1994 / scHiCluster
  ☆69Updated 2 months ago
• Hughes-Genome-Group / deepC
  A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence
  ☆33Updated last week
• saezlab / corneto
  Unified knowledge-driven network inference from omics data
  ☆91Updated 2 weeks ago
• rajewsky-lab / spacemake
  ☆49Updated this week
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆60Updated last month
• r-bioinformatics / edgePy
  A Python implementation of edgeR for differential expression analysis
  ☆104Updated 6 years ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆57Updated 5 years ago
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆125Updated 11 months ago
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆111Updated 3 years ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆32Updated 2 years ago
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆30Updated 2 weeks ago
• bernardo-de-almeida / DeepSTARR
  Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…
  ☆72Updated 2 years ago
• dylkot / pyWNN
  Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)
  ☆19Updated 4 years ago
• parashardhapola / scarf
  Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…
  ☆110Updated 2 months ago
• saezlab / omnipath
  Python client for the OmniPath web service
  ☆57Updated 7 months ago