harryhaller001 / keggtoolsLinks
Library for KEGG pathway enrichment analysis
☆16Updated 3 months ago
Alternatives and similar repositories for keggtools
Users that are interested in keggtools are comparing it to the libraries listed below
Sorting:
- ☆55Updated 3 months ago
- Multimodal Data (.h5mu) implementation for Python☆99Updated 3 months ago
- Porting DESeq2 into python via rpy2☆68Updated 2 years ago
- bioinformatics plotting and tools☆59Updated last year
- InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.☆104Updated last week
- CZ CELLxGENE Discover Census☆109Updated last week
- Normalization of RNA-seq gene expression☆98Updated 2 months ago
- Multi-omics factor analysis v2☆50Updated 10 months ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆66Updated last year
- Parsing tools for GTF (gene transfer format) files☆121Updated 6 months ago
- A simple pythonic interface to biomart.☆56Updated 5 years ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆102Updated 5 months ago
- Fast-ish (and correct!) quantile normalization in Python.☆31Updated 3 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated last week
- Molecular interactions inference from single-cell multi-omics data☆27Updated 3 weeks ago
- ☆44Updated last month
- Scripts for using scanpy☆38Updated 6 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆51Updated 4 months ago
- Python package to perform normalization and variance-stabilization of single-cell data☆25Updated 2 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆118Updated last week
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- Flow & mass cytometry analytics.☆54Updated last week
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆89Updated 11 months ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆53Updated last year
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆119Updated 3 years ago
- Batch balanced KNN☆170Updated last year
- Work with trained factor models in Python☆35Updated 10 months ago
- A Python implementation of edgeR for differential expression analysis☆103Updated 6 years ago
- Single-Cell Clustering Assessment Framework☆105Updated last year