scverse / rapids_singlecellLinks
Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.
☆213Updated this week
Alternatives and similar repositories for rapids_singlecell
Users that are interested in rapids_singlecell are comparing it to the libraries listed below
Sorting:
- Python package to perform enrichment analysis from omics data.☆205Updated last week
- Scaling Single Cell Analysis to Millions of Cells☆217Updated last week
- LIANA+: an all-in-one framework for cell-cell communication☆218Updated this week
- muon is a multimodal omics Python framework☆239Updated 3 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆332Updated 11 months ago
- Detect doublets in single-cell RNA-seq data☆153Updated 4 years ago
- Perturbation Analysis in the scverse ecosystem.☆182Updated last week
- A scanpy extension to analyse single-cell TCR and BCR data.☆233Updated last week
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆203Updated last year
- A package to help convert different single-cell data formats to each other☆428Updated last year
- Single-cell epigenomics analysis tools☆263Updated 3 weeks ago
- Conversion between scRNA-seq objects☆176Updated this week
- Differential expression analysis for single-cell RNA-seq data.☆198Updated 3 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆227Updated 5 months ago
- reticulate-free single cell format conversion☆160Updated 6 months ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆159Updated 2 weeks ago
- A tool for semi-automatic cell type classification☆375Updated last month
- LIANA: a LIgand-receptor ANalysis frAmework☆208Updated 10 months ago
- A tool for detecting somatic variants in single cell data☆206Updated 9 months ago
- ☆268Updated 7 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆362Updated 2 months ago
- Scanpy Tutorials.☆215Updated this week
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆159Updated 2 years ago
- A toolkit of spatial transcriptomic analysis.☆253Updated this week
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆162Updated 2 months ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆144Updated 6 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆110Updated last month
- ☆167Updated 9 months ago
- Interpretation of cell states using reference single-cell maps☆278Updated last month
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆279Updated 2 years ago