complextissue / pytximportLinks
Feature-rich Python implementation of the tximport package for gene count estimation.
☆41Updated 2 months ago
Alternatives and similar repositories for pytximport
Users that are interested in pytximport are comparing it to the libraries listed below
Sorting:
- simplified cellranger for long-read data☆19Updated 3 months ago
- A Python library to visualize and analyze long-read transcriptomes☆64Updated 7 months ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- ☆16Updated last year
- ☆39Updated 5 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆40Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- splicing and feature maps for RBPs☆25Updated 3 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- ☆18Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- Transcription Factor Enrichment Analysis☆36Updated 2 weeks ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆62Updated 6 months ago
- ☆34Updated last month
- Snakemake pipeline for microexon discovery and quantification☆20Updated 11 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- Builds a PEP from SRA or GEO accessions☆54Updated 3 weeks ago
- A script to make downloading of SRA/GEO data easier☆31Updated 2 years ago
- A rust framework to make using alevin-fry even simpler☆60Updated 7 months ago
- Detection and couting alternative TSS in single cells☆16Updated last year
- Blazing fast toolkit to work with .hic and .cool files☆42Updated this week
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆28Updated 3 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆29Updated 2 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 2 months ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago