ding-lab / VirusScanLinks
VirusScan Pipeline
☆11Updated last week
Alternatives and similar repositories for VirusScan
Users that are interested in VirusScan are comparing it to the libraries listed below
Sorting:
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- ☆23Updated last year
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Updated 4 years ago
- Accompanying analysis code for the FRASER manuscript☆26Updated 5 years ago
- ☆12Updated 2 years ago
- ☆13Updated 10 months ago
- cross-species analysis of cell identities, markers and regulations☆12Updated 6 months ago
- ☆25Updated 3 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- bioinfo workflow based on snakemake☆14Updated last year
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆27Updated last year
- A user-friendly Python toolkit, which provides a comprehensive pipeline to easily explore the cohort-based mutational characterization fo…☆21Updated 3 years ago
- ☆22Updated 3 months ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- ☆12Updated 7 years ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Updated 2 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- a R package to identify neoantigens from NGS data☆19Updated 8 years ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆24Updated 3 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆20Updated 2 months ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆25Updated 3 years ago
- Gene Expression Decomposition and Integration☆19Updated 10 months ago
- Testing a neutral evolution model on cancer sequencing data☆10Updated 4 years ago
- A Tidy Framework to Hack Gene Expression Signatures☆20Updated 8 months ago
- ☆18Updated last year
- Codes to regenerate figures for mutagen paper☆11Updated 4 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 5 years ago
- Comprehensive Human Expressed SequenceS☆18Updated 5 months ago