sfortma2 / scranPY
A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing
☆33Updated last year
Related projects ⓘ
Alternatives and complementary repositories for scranPY
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated☆24Updated last week
- ☆20Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 2 weeks ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆59Updated 6 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated last month
- ☆40Updated 6 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆36Updated 2 months ago
- Gene group activity utility functions for Scanpy☆56Updated 3 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- Dynamic models for single-cell RNA-seq time series.☆39Updated 6 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆56Updated 3 weeks ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 3 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆56Updated 4 months ago
- ☆22Updated last month
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆53Updated 6 months ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆32Updated 2 months ago
- ☆45Updated 6 months ago
- ☆26Updated 10 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆44Updated 4 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆31Updated 2 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆20Updated 3 years ago
- Regulatory networks with Direct Information in python☆38Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆61Updated 6 months ago
- R implementation of GeneTrajectory☆48Updated 7 months ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆39Updated this week
- Repository to perform mapping of new datasets to the Human Lung Cell Atlas.☆19Updated last year
- .h5mu files interface for Seurat☆26Updated 11 months ago