sfortma2 / scranPYLinks
A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing
☆34Updated 2 years ago
Alternatives and similar repositories for scranPY
Users that are interested in scranPY are comparing it to the libraries listed below
Sorting:
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆63Updated this week
- ☆22Updated 3 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆27Updated 11 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆50Updated 10 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆42Updated last year
- Non-parametric density inference for single-cell analysis.☆74Updated 6 months ago
- Analyzing cellular niches in spatial transcriptomics data☆33Updated last year
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- Information-based dimensionality reduction☆29Updated last year
- MultiMAP for integration of single cell multi-omics☆55Updated 2 years ago
- spatial transcriptome, single cell☆72Updated 2 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- Identification of spatial homogeneous regions☆21Updated 2 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- CAST package☆41Updated last year
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆35Updated 2 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last month
- ☆44Updated last month
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Updated 8 months ago
- ☆35Updated 9 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 5 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆24Updated 2 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- A repository for benchmarking spatial deconvolution and mapping tools☆35Updated 7 months ago
- ☆22Updated 5 years ago
- Benchmark of GRNs using the GRETA pipeline☆29Updated last week
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated last month