sfortma2 / scranPY
A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing
☆34Updated last year
Alternatives and similar repositories for scranPY:
Users that are interested in scranPY are comparing it to the libraries listed below
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆49Updated last week
- ☆21Updated 2 years ago
- CAST package☆34Updated 6 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Repository to perform mapping of new datasets to the Human Lung Cell Atlas.☆19Updated last year
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- ☆36Updated 7 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆54Updated last month
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated 2 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆25Updated 4 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 3 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- A set of files to do genomics analysis on python☆18Updated 5 months ago
- Nonnegative spatial factorization for multivariate count data☆58Updated last year
- Dynamic models for single-cell RNA-seq time series.