sfortma2 / scranPYLinks
A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing
☆35Updated last year
Alternatives and similar repositories for scranPY
Users that are interested in scranPY are comparing it to the libraries listed below
Sorting:
- ☆22Updated 3 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆61Updated 2 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆27Updated 9 months ago
- CAST package☆40Updated last year
- Analyzing cellular niches in spatial transcriptomics data☆31Updated 11 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆50Updated 9 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- ☆41Updated 2 months ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆65Updated 3 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- Information-based dimensionality reduction☆29Updated 10 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆41Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆23Updated last month
- Repository to perform mapping of new datasets to the Human Lung Cell Atlas.☆20Updated 2 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆55Updated last year
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆35Updated last month
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- Identification of spatial homogeneous regions☆21Updated 3 weeks ago
- ☆45Updated 3 weeks ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated last month
- ☆31Updated 7 months ago
- Multi-modal single cell analysis pipelines☆59Updated last week
- ☆22Updated 5 years ago
- Translates an AnnData object with mouse gene symbols into one with human gene symbols by mapping orthologs from biomart.☆27Updated 4 months ago
- Non-parametric density inference for single-cell analysis.☆72Updated 5 months ago