hernet / transcriptional-map-nk
We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and tissue. We also analyze data from various solid tumors and map these onto this reference.
☆11Updated 6 months ago
Alternatives and similar repositories for transcriptional-map-nk:
Users that are interested in transcriptional-map-nk are comparing it to the libraries listed below
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated 2 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆19Updated last week
- ☆20Updated last year
- Spatial transcriptomics of heart tissue☆21Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 5 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆36Updated 4 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 3 months ago
- ☆18Updated last year
- ☆17Updated last year
- ☆15Updated last year
- Single-Cell Inference of Class Switch Recombination☆19Updated last month
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Updated 3 years ago
- Functions for single cell data analysis☆31Updated 3 years ago
- ☆25Updated 11 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆64Updated 6 months ago
- ☆10Updated 2 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 11 months ago
- ☆24Updated 2 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆40Updated 2 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- HCC single cell analysis for Alvarez, Benhammou et al.☆16Updated 3 years ago
- Code for the spatial transcriptomic paper on IPF lungs☆16Updated 9 months ago
- ☆9Updated 9 months ago
- ☆15Updated last year
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆30Updated 2 years ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆14Updated 5 months ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated 2 months ago
- ☆22Updated 2 years ago