cibiobcg / EthSEQLinks
Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data
☆16Updated 2 years ago
Alternatives and similar repositories for EthSEQ
Users that are interested in EthSEQ are comparing it to the libraries listed below
Sorting:
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last month
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated 2 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- ☆33Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 2 months ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆44Updated last week
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Filters for false-positive mutation calls in NGS☆32Updated 6 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated 3 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Genomic data interpretation and visualization Workshop☆21Updated last month
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆27Updated 2 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆61Updated 8 months ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- An R package for predicting HR deficiency from mutation contexts☆29Updated 6 months ago
- RNA-seq workflow: differential transcript usage☆22Updated 2 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆34Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- RNA editing quantification in deep transcriptome data☆15Updated last month
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆72Updated 5 months ago
- An R interface to the MEME Suite☆52Updated 2 months ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago