cibiobcg / EthSEQLinks
Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data
☆16Updated 2 years ago
Alternatives and similar repositories for EthSEQ
Users that are interested in EthSEQ are comparing it to the libraries listed below
Sorting:
- Merge fastq files split over lanes☆20Updated 7 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- ☆22Updated 6 months ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- a set of NGS pipelines☆24Updated this week
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆39Updated 2 weeks ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- ☆11Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ☆23Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Repository for the Anczukow-Lab splicing pipeline☆16Updated 3 months ago
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆13Updated last week
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 5 months ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated 2 weeks ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 10 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Updated last year
- Rocking R at UMCCR☆9Updated 4 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated 2 months ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- ☆13Updated 7 years ago