nimwegenLab / cellstatesLinks
Finding gene expression states in scRNA-seq data
☆51Updated last year
Alternatives and similar repositories for cellstates
Users that are interested in cellstates are comparing it to the libraries listed below
Sorting:
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆77Updated 2 months ago
- Latent Embedding Multivariate Regression☆92Updated 7 months ago
- ☆41Updated last month
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated last month
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆77Updated 3 months ago
- R implementation of MULTI-seq sample classification workflow☆63Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆85Updated last week
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆53Updated 10 months ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- ☆17Updated last year
- Cell type pipes for R☆51Updated last year
- ☆32Updated 5 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆115Updated 2 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆70Updated 11 months ago
- ☆29Updated 2 years ago
- ☆55Updated 4 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 2 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 7 months ago
- ☆59Updated 10 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆84Updated last month
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 2 years ago
- ☆76Updated last year
- R package for semi-supervised single-cell data integration☆84Updated last month
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆83Updated 10 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated 2 months ago