Alternatives and similar repositories for cellstates

Users that are interested in cellstates are comparing it to the libraries listed below

• jmbreda / Sanity
  Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
  ☆77Updated 3 months ago
• const-ae / lemur
  Latent Embedding Multivariate Regression
  ☆93Updated 8 months ago
• lhe17 / nebula
  ☆41Updated last month
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆53Updated 11 months ago
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆70Updated last year
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆64Updated last year
• chung-lab / SCAFE
  Single Cell Analysis of Five'Ends
  ☆50Updated last year
• PoolLab / generecovery
  ☆29Updated 2 years ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆86Updated last month
• alexisvdb / singleCellHaystack
  Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
  ☆84Updated 11 months ago
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆42Updated 2 years ago
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆79Updated 4 months ago
• corceslab / CHOIR
  CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)
  ☆78Updated 3 months ago
• vib-singlecell-nf / vsn-pipelines
  A repository of pipelines for single-cell data in Nextflow DSL2
  ☆75Updated 2 years ago
• morris-lab / Capybara
  Capybara: A computational tool to measure cell identity and fate transitions
  ☆59Updated 3 years ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆53Updated 2 months ago
• elimereu / matchSCore2
  ☆55Updated 4 years ago
• cellatlas / cellatlas
  ☆17Updated last year
• UPSUTER / GEMLI
  ☆32Updated 6 months ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆120Updated last week
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆85Updated 2 months ago
• gillislab / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆39Updated 6 months ago
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆90Updated last year
• abelson-lab / scATOMIC
  Pan-Cancer Single Cell Classifier
  ☆74Updated last year
• timoast / sinto
  Tools for single-cell data processing
  ☆125Updated last year
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆92Updated 7 months ago
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆51Updated last year
• lcmmichielsen / scHPL
  ☆35Updated 4 months ago