Finding gene expression states in scRNA-seq data
☆52Mar 22, 2024Updated 2 years ago
Alternatives and similar repositories for cellstates
Users that are interested in cellstates are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Porting of Protein Activity and Pathway Inference to single cell and Python.☆14Jun 12, 2026Updated 2 weeks ago
- ☆67Sep 13, 2024Updated last year
- ☆17Jul 12, 2024Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆26Feb 26, 2026Updated 4 months ago
- ☆21Jul 17, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆51May 14, 2025Updated last year
- Alignability testing and integration of single-cell data☆24Feb 29, 2024Updated 2 years ago
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆37Dec 15, 2025Updated 6 months ago
- machine-readable file format for genomic library sequence and structure☆130Jun 19, 2026Updated last week
- Coarse-graining of large single-cell RNA-seq data into metacells☆102Apr 16, 2026Updated 2 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆89Aug 10, 2025Updated 10 months ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆81Updated this week
- R and MATLAB scripts for MAGICAL☆12Jun 26, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆49Oct 29, 2025Updated 8 months ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆18Oct 5, 2024Updated last year
- A wrapper around the sleepwalk package that allows for interactive knn visualizations of an embedding.☆22May 8, 2024Updated 2 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆192Mar 27, 2025Updated last year
- Multi-resolution Variational Inference☆23May 25, 2026Updated last month
- Single-cell analysis with non-negative matrix factorization☆49Jul 24, 2025Updated 11 months ago
- ☆16Sep 1, 2023Updated 2 years ago
- reticulate-free single cell format conversion☆219Mar 16, 2026Updated 3 months ago
- ☆39Apr 16, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- COMUNET: a tool to explore and visualize intercellular communication☆12Apr 15, 2020Updated 6 years ago
- ☆45Oct 30, 2024Updated last year
- ☆13Sep 3, 2025Updated 9 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆61Aug 17, 2024Updated last year
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- Analyzing cellular niches in spatial transcriptomics data☆37Nov 18, 2024Updated last year
- ☆224Jun 13, 2026Updated 2 weeks ago
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆126Jun 4, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Python implementation of the Slingshot pseudotime algorithm☆76Oct 28, 2025Updated 8 months ago
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Nov 11, 2019Updated 6 years ago
- ☆25Dec 5, 2025Updated 6 months ago
- ☆21Mar 2, 2026Updated 3 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- Blood Transcription Modules for interpreting blood transcriptomics data☆11Nov 25, 2024Updated last year