Alternatives and similar repositories for singularity-catalog

Users that are interested in singularity-catalog are comparing it to the libraries listed below

• singularityhub / singularity2docker
  convert a singularity image back to Docker, full circle! #containerfriends
  ☆25Updated 5 years ago
• MonashBioinformaticsPlatform / learning-resource-links
  An awesome list of learning resources for bioinformatics, genomics and computational biology
  ☆22Updated 5 months ago
• NIH-HPC / singularity-examples
  example singularity definition files and demos
  ☆28Updated 7 years ago
• PawseySC / singularity-containers
  Webinars&Tutorial on Containers on HPC and Cloud with Singularity
  ☆27Updated 4 years ago
• jorainer / ensembldb
  This is the ensembldb development repository.
  ☆36Updated 5 months ago
• NKI-CCB / DISCOVER
  DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data
  ☆32Updated 9 months ago
• jokergoo / bsub
  Send R code/R scripts/shell commands to LSF cluster without leaving R
  ☆26Updated 10 months ago
• Snakemake-Profiles / pbs-torque
  ☆17Updated 2 years ago
• SigProfilerSuite / SigProfilerMatrixGeneratorR
  R wrapper for utilizing the SigProfilerMatrixGenerator framework
  ☆20Updated last week
• GSEA-MSigDB / ssGSEA-gpmodule
  A GenePattern module for running the ssGSEA method
  ☆14Updated 11 months ago
• ELELAB / MoonlightR
  ☆17Updated last year
• igordot / babelgene
  Gene orthologs for model organisms in a tidy data format
  ☆14Updated 3 years ago
• singularityhub / singularity-deploy
  Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client
  ☆17Updated 2 years ago
• daisybio / SPONGE
  Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference
  ☆14Updated 2 months ago
• tatami-inc / tatami
  C++ API for various matrix types.
  ☆15Updated 3 weeks ago
• Bioconductor / BiocFileCache
  Manage Files Across Sessions
  ☆13Updated 3 months ago
• aifimmunology / PALMO
  Identify Intra-, Inter-donor variations in bulk or single cell longitudinal dataset
  ☆24Updated 2 years ago
• manuparra / singularitycontainers-on-m1-arm64
  This is a repository containing a ready-to-use environment for singularity in arm64 (Apple M1).
  ☆18Updated 4 years ago
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆40Updated last year
• moosa-r / rbioapi
  rbioapi: User-Friendly R Interface to Biologic Web Services' API
  ☆23Updated last week
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆19Updated last year
• NIH-HPC / singularity-def-files
  definition files and wrapper scripts used by NIH HPC staff to install user-facing apps on the Biowulf cluster
  ☆33Updated 4 years ago
• NourMarzouka / multiclassPairs
  Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.
  ☆13Updated 2 years ago
• beroukhim-lab / BISCUT-py3
  ☆11Updated last year
• UriaMorP / mprod_package
  Software implementation for tensor-tensor m-product
  ☆14Updated 2 years ago
• asntech / postdoc-funding-schemes
  Funding schemes and travel grant opportunities for postdocs
  ☆55Updated 7 years ago
• Bioconductor / bioc-run
  Helper script for bioconductor/bioconductor_docker
  ☆13Updated 10 months ago
• Bioconductor / Rsamtools
  Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
  ☆28Updated 3 months ago
• dpryan79 / Misc
  Misc. utilities
  ☆11Updated 6 years ago
• snakemake / snakemake-workflow-catalog
  A statically generated catalog of available Snakemake workflows
  ☆36Updated this week