SamueleSoraggi / HMMploidyLinks
A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models
☆18Updated 2 years ago
Alternatives and similar repositories for HMMploidy
Users that are interested in HMMploidy are comparing it to the libraries listed below
Sorting:
- Genome alignment and synteny plots☆31Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 6 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Consensus genome annotation using OMA☆26Updated 2 months ago
- Yet another Hi-C scaffolding tool☆22Updated 10 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆21Updated 2 weeks ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 6 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 7 months ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Updated 2 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated 3 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 5 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Updated 5 years ago
- The MafFilter genome alignment processor☆19Updated 4 months ago
- Domain based annotation of transposable elements☆20Updated 4 months ago
- R package to draw syntenic plots in 3 different styles☆42Updated 3 weeks ago
- Long Read Based SV Calling Tools Analysis☆14Updated last year
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 3 years ago
- ☆27Updated 3 weeks ago
- SINE annotation tool for plant genomes☆18Updated last year
- ☆42Updated last year