SamueleSoraggi / HMMploidyLinks
A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models
☆18Updated 2 years ago
Alternatives and similar repositories for HMMploidy
Users that are interested in HMMploidy are comparing it to the libraries listed below
Sorting:
- Genome alignment and synteny plots☆30Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 5 months ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Updated 2 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆21Updated last year
- plot genome alignment synteny☆21Updated 5 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated this week
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Consensus genome annotation using OMA☆26Updated last month
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 5 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Likelihood-based Selective Sweep Detection☆40Updated last year
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- R package to draw syntenic plots in 3 different styles☆41Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated last month
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- Domain based annotation of transposable elements☆20Updated 2 months ago
- Multi-genome synteny block visualization tool☆42Updated 6 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 5 months ago
- ☆27Updated 7 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 5 months ago
- ☆16Updated 7 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 10 months ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- Yet another Hi-C scaffolding tool☆21Updated 9 months ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Updated 5 years ago