Weikai-47 / Pepper_T2TLinks
Here, we report telomere-to-telomere (T2T) gap-free genomes for domesticated pepper Capsicum annuum and wild relative Capsicum rhomboideum.
☆12Updated last year
Alternatives and similar repositories for Pepper_T2T
Users that are interested in Pepper_T2T are comparing it to the libraries listed below
Sorting:
- ☆25Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆23Updated 2 years ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 3 weeks ago
- ☆27Updated 2 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆45Updated this week
- This is a method to find telomeres and centromeres in plants.☆40Updated last year
- Scripts that used in our chicken T2T manuscript.☆19Updated last year
- ☆15Updated 3 years ago
- ☆15Updated last year
- This is a series of scripts on the rapid construction of target interval consensus sequences from bam files and the rapid construction of…☆16Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆34Updated this week
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- ☆25Updated 3 years ago
- ☆20Updated 9 months ago
- ☆27Updated 5 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆40Updated 8 months ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 4 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- ☆40Updated 2 years ago
- a software for annotating plant genes☆22Updated last year
- Easily construct the ML species tree with single-copy gene shared by different species.☆26Updated 6 years ago
- Some useful gadgets☆10Updated 3 years ago
- The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding☆14Updated 3 months ago
- Yet another Hi-C scaffolding tool☆19Updated 7 months ago
- ☆35Updated 6 months ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆17Updated 7 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆32Updated 8 months ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆13Updated 2 weeks ago