Official code repository for the paper READRetro: Natural Product Biosynthesis Planning with Retrieval-Augmented Dual-View Retrosynthesis
☆24Jun 8, 2024Updated 2 years ago
Alternatives and similar repositories for READRetro
Users that are interested in READRetro are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Explore potential Biosynthetic Gene Clusters in plant genomes. This tool is originally sourced from antiSMASH 4.0.☆37Feb 26, 2026Updated 3 months ago
- An Integrative Toolkit for Assembling Plant Mitochondrial Genomes Using HiFi Reads☆27May 8, 2026Updated last month
- HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high…☆10Apr 15, 2025Updated last year
- Official code of Graph Truncated Attention for Retrosynthesis in AAAI2021☆14Apr 10, 2023Updated 3 years ago
- Biosynthesis Navigator for Natural Products☆57Jul 4, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13Jun 11, 2025Updated last year
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- ☆18Apr 28, 2026Updated last month
- ☆12Jul 10, 2022Updated 3 years ago
- a gap-filling tools of genome in complex region.☆26Dec 30, 2025Updated 5 months ago
- A database of In-Silico predicted MS/MS spectrum of Natural Products☆15Sep 24, 2022Updated 3 years ago
- Visualing species tree from ASTRAL with gene tree discordance☆31May 13, 2025Updated last year
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆17Nov 19, 2025Updated 6 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- GWAS analysis process based on EMMAX software☆18Dec 12, 2023Updated 2 years ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- DataColor: Unveiling Biological Data Relationships through Distinctive Color Mapping☆17Nov 23, 2023Updated 2 years ago
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Mar 6, 2024Updated 2 years ago
- ☆29Jul 16, 2022Updated 3 years ago
- Reinforcement Learning based bioretrosynthesis tool☆59Apr 2, 2025Updated last year
- Flavonoids are specialized metabolites in plants that have numerous functions including protection against abiotic stresses, pigmentation…☆21Jun 5, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆27May 18, 2024Updated 2 years ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 3 months ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆10Dec 7, 2022Updated 3 years ago
- Interactif molecule representations / drawing as react components☆10Feb 18, 2026Updated 3 months ago
- ☆14Dec 2, 2024Updated last year
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆21Oct 15, 2024Updated last year
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 2 years ago
- DeepMASS2 is a cross-platform GUI software tool, which enables deep-learning based metabolite annotation via semantic similarity analysis…☆14Jan 22, 2026Updated 4 months ago
- NGS QC Toolkit: a toolkit for quality check and filtering of next generation sequencing data of Roche and Illumina technology (http://www…☆16Mar 19, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆49Jun 30, 2025Updated 11 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆42May 22, 2026Updated 3 weeks ago
- Encoder-decoders for translating different chemical formats.☆21Sep 17, 2025Updated 8 months ago
- ☆24Nov 19, 2025Updated 6 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated 2 years ago
- ☆16Apr 24, 2025Updated last year
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆21Oct 12, 2025Updated 8 months ago