Official code repository for the paper READRetro: Natural Product Biosynthesis Planning with Retrieval-Augmented Dual-View Retrosynthesis
☆24Jun 8, 2024Updated 2 years ago
Alternatives and similar repositories for READRetro
Users that are interested in READRetro are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Biosynthesis Navigator for Natural Products☆57Jul 4, 2022Updated 4 years ago
- Explore potential Biosynthetic Gene Clusters in plant genomes. This tool is originally sourced from antiSMASH 4.0.☆38Feb 26, 2026Updated 5 months ago
- HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high…☆11Jun 26, 2026Updated last month
- ☆12Jun 11, 2025Updated last year
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆12Jul 10, 2022Updated 4 years ago
- ☆19Jul 12, 2026Updated last month
- A database of In-Silico predicted MS/MS spectrum of Natural Products☆15Sep 24, 2022Updated 3 years ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- ☆17Nov 19, 2025Updated 8 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- DeepMASS2 is a cross-platform GUI software tool, which enables deep-learning based metabolite annotation via semantic similarity analysis…☆15Jan 22, 2026Updated 6 months ago
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Mar 6, 2024Updated 2 years ago
- DataColor: Unveiling Biological Data Relationships through Distinctive Color Mapping☆18Nov 23, 2023Updated 2 years ago
- Flavonoids are specialized metabolites in plants that have numerous functions including protection against abiotic stresses, pigmentation…☆20Jun 5, 2026Updated 2 months ago
- Highly accurate discovery of terpene synthases powered by machine learning☆17Aug 6, 2026Updated last week
- An Integrative Toolkit for Assembling Plant Mitochondrial Genomes Using HiFi Reads☆29Updated this week
- ☆29Jul 16, 2022Updated 4 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆27May 18, 2024Updated 2 years ago
- Reinforcement Learning based bioretrosynthesis tool☆60Apr 2, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 5 months ago
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆21Oct 15, 2024Updated last year
- Interactif molecule representations / drawing as react components☆10Feb 18, 2026Updated 5 months ago
- ☆25Oct 16, 2024Updated last year
- a gap-filling tools of genome in complex region.☆28Dec 30, 2025Updated 7 months ago
- Codebase for NaFM: Pre-training a Foundation Model for Small-Molecule Natural Products☆27May 10, 2026Updated 3 months ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 2 years ago
- ☆28May 12, 2026Updated 3 months ago
- a Semi-automated pipeline for assembling T2T genome☆28Oct 16, 2025Updated 9 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- NGS QC Toolkit: a toolkit for quality check and filtering of next generation sequencing data of Roche and Illumina technology (http://www…☆16Mar 19, 2021Updated 5 years ago
- R package for MetFrag☆24Sep 25, 2017Updated 8 years ago
- A tool for motif annotation and visualization in tandem repeats.☆15May 26, 2025Updated last year
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- A Bio2BEL package for DrugBank (https://www.drugbank.ca)☆10Dec 14, 2020Updated 5 years ago
- An easy-to-use python package can be used for genomic visual analysis☆23Apr 20, 2024Updated 2 years ago