Alternatives and similar repositories for AlphaLink

Users that are interested in AlphaLink are comparing it to the libraries listed below

• Rappsilber-Laboratory / AlphaLink2
  AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
  ☆57Updated 3 weeks ago
• dina-lab3D / CombFold
  ☆86Updated 11 months ago
• AbSciBio / igdesign
  ☆45Updated 8 months ago
• cmbi / dssp
  The DSSP building software
  ☆47Updated 2 years ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆69Updated last year
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆135Updated 3 weeks ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆84Updated 3 months ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 5 years ago
• jproney / AF2Rank
  ☆112Updated 2 years ago
• ProteinDesignLab / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆79Updated 2 years ago
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆73Updated 3 months ago
• Kuhlman-Lab / evopro
  ☆87Updated last month
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆56Updated last week
• hefeda / PGP
  ☆42Updated 2 weeks ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆52Updated last month
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆44Updated 2 years ago
• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 5 months ago
• swanss / FragFold
  Fragment binding prediction with ColabFold
  ☆37Updated 5 months ago
• Exscientia / abodybuilder3
  ☆67Updated 10 months ago
• oxpig / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆50Updated 2 years ago
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆34Updated 5 months ago
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆96Updated 2 years ago
• leandroradusky / pyfoldx
  pyFoldX: python bindings for FoldX.
  ☆48Updated 4 years ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆49Updated 7 months ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆32Updated last year
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)
  ☆58Updated 5 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆65Updated 9 months ago
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆43Updated 2 years ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated 2 months ago
• JoaoRodrigues / interfacea
  An open-source library for the analysis of protein interactions.
  ☆29Updated 3 years ago