AlphaLink: Integrating crosslinking MS data into OpenFold
☆77Dec 14, 2023Updated 2 years ago
Alternatives and similar repositories for AlphaLink
Users that are interested in AlphaLink are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆73Apr 13, 2026Updated 6 months ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆69Aug 26, 2025Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆75Jan 31, 2024Updated 2 years ago
- ☆121Dec 7, 2022Updated 3 years ago
- An open-source platform for developing protein models beyond AlphaFold.☆424Jun 26, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Explicit crosslinks in AlphaFold 3☆22Mar 17, 2025Updated last year
- This repository contains the installation zip file, user manual, example data, and source code for the PyXlinkViewer plugin for PyMOL v2☆10Jul 3, 2023Updated 3 years ago
- ☆15Sep 4, 2026Updated last month
- Deploying synthetic coevolution and machine learning to engineer protein-protein interactions☆17Jul 30, 2023Updated 3 years ago
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆177Sep 8, 2024Updated 2 years ago
- Deep convolutional networks for fold recognition☆22Nov 8, 2019Updated 6 years ago
- Deep transformer for predicting interchain residue-residue distances of protein complexes☆14Mar 19, 2024Updated 2 years ago
- A collection of *fold* tools☆303Aug 8, 2025Updated last year
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆192Oct 7, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆39Jul 28, 2022Updated 4 years ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…☆174Feb 25, 2024Updated 2 years ago
- Database of Interacting Protein Structures (DIPS)☆106Jan 26, 2024Updated 2 years ago
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆106Jun 9, 2025Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆102Jul 29, 2024Updated 2 years ago
- a toolbox for the manipulation, modelling and analysis of molecular structures☆28Oct 5, 2026Updated last week
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 3 years ago
- ☆94Sep 7, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- EnsembleFlex - Flexibility Analysis of Structure Ensembles☆20Sep 10, 2025Updated last year
- Data set of protein-ligand complexes with reliable experimental structures and affinities☆47Oct 2, 2025Updated last year
- Public version for Distance-AF☆32Aug 17, 2025Updated last year
- ☆27May 9, 2022Updated 4 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆100Jan 26, 2022Updated 4 years ago
- Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold☆31Sep 13, 2024Updated 2 years ago
- ☆118Jan 3, 2026Updated 9 months ago
- ResPRE is an algorithm for protein residue-residue contact-map prediction☆21May 20, 2019Updated 7 years ago
- DeepContact Software☆26Jun 16, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Graph Learning of INTER-protein contacts☆11Feb 20, 2022Updated 4 years ago
- ☆324Updated this week
- ☆94Sep 25, 2024Updated 2 years ago
- A package to predict protein inter-residue geometries from sequence data☆222Sep 27, 2021Updated 5 years ago
- Compressing protein structures effectively with torsion angles☆197Sep 7, 2026Updated last month
- ☆137Sep 14, 2022Updated 4 years ago
- A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins☆24Jan 25, 2024Updated 2 years ago