clami66 / dgram2dmapLinks
Converts AlphaFold distograms into distance matrices and saves them into a number of formats
☆12Updated 2 years ago
Alternatives and similar repositories for dgram2dmap
Users that are interested in dgram2dmap are comparing it to the libraries listed below
Sorting:
- Highly accurate and efficient deep learning paradigm for full-atom protein loop modeling with KarmaLoop☆12Updated last year
- Generative diverse protein backbones by protein language model☆32Updated 6 months ago
- ☆16Updated 10 months ago
- ☆28Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆32Updated last year
- Code for the paper "Learning to engineer protein flexibility".☆18Updated 2 months ago
- Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational m…☆10Updated 3 years ago
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆13Updated 6 months ago
- scripts to find PBD structures for cancer driver proteins☆31Updated 4 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆37Updated 2 months ago
- Clusters protein chains based on CA distance difference☆14Updated 4 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆33Updated 7 months ago
- ☆14Updated 4 months ago
- A Light-Weight And Interpretable Molecular Docking Model☆20Updated 8 months ago
- ☆48Updated 5 months ago
- Protein-Ligand Binding Affinity Prediction with GNN and Transfer Learning From Protein Language Models☆30Updated 3 weeks ago
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Updated 10 months ago
- IDPFold test version☆21Updated 9 months ago
- A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.☆28Updated 2 years ago
- Baseline model for PPB-Affinity benchmark data☆25Updated last month
- Interface-aware molecular generative framework for protein-protein interaction modulators☆14Updated 6 months ago
- ☆27Updated last week
- ☆32Updated last year
- ☆43Updated 9 months ago
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆28Updated last year
- Extension of ThermoMPNN for double mutant predictions☆33Updated 3 months ago
- Pretrained METL models with minimal dependencies☆14Updated last month
- ☆50Updated 3 months ago
- ☆23Updated last year
- ☆67Updated 3 months ago