clami66 / dgram2dmapLinks
Converts AlphaFold distograms into distance matrices and saves them into a number of formats
☆14Updated 3 years ago
Alternatives and similar repositories for dgram2dmap
Users that are interested in dgram2dmap are comparing it to the libraries listed below
Sorting:
- code for SeqDance/ESMDance, biophysics-informed protein language models☆53Updated last week
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆37Updated last year
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆29Updated 2 years ago
- protein structure generation with sparse all-atom denoising models☆59Updated last month
- Public version for Distance-AF☆30Updated 5 months ago
- Modelling protein conformational landscape with Alphafold☆54Updated 5 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆61Updated 8 months ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆43Updated last year
- Baseline model for PPB-Affinity benchmark data☆34Updated 8 months ago
- Structure prediction and design of proteins with noncanonical amino acids☆117Updated last week
- Predicting mutational effects on protein binding from folding energy. ICML 2025.☆40Updated 6 months ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆60Updated last week
- mdml: Deep Learning for Molecular Simulations☆50Updated 8 months ago
- Deep generative modeling of protein structural ensembles☆36Updated 4 months ago
- A benchmark for 3D biomolecular structure prediction models☆69Updated 8 months ago
- A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.☆32Updated 3 years ago
- ☆37Updated 2 years ago
- ☆42Updated last year
- Making Protein folding accessible to all!☆25Updated 2 years ago
- ☆54Updated 2 months ago
- Differentiable Pairing using Alignment-based Language Models☆24Updated 2 years ago
- Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold☆26Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Updated 2 years ago
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆49Updated 2 months ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆66Updated last month
- ☆74Updated 10 months ago
- ☆35Updated 2 months ago
- ☆40Updated last year
- Convert coarse-grained protein structure to all-atom model☆49Updated 8 months ago
- A Light-Weight And Interpretable Molecular Docking Model☆24Updated last year