clami66 / dgram2dmap
Converts AlphaFold distograms into distance matrices and saves them into a number of formats
☆11Updated 2 years ago
Alternatives and similar repositories for dgram2dmap:
Users that are interested in dgram2dmap are comparing it to the libraries listed below
- Highly accurate and efficient deep learning paradigm for full-atom protein loop modeling with KarmaLoop☆11Updated 9 months ago
- Generative diverse protein backbones by protein language model☆31Updated 3 months ago
- ☆14Updated last month
- scripts to find PBD structures for cancer driver proteins☆31Updated last month
- Code for the paper "Learning to engineer protein flexibility".☆16Updated this week
- ☆28Updated last year
- ☆34Updated 11 months ago
- Modelling protein conformational landscape with Alphafold☆46Updated 3 weeks ago
- ☆16Updated 7 months ago
- Differentiable Pairing using Alignment-based Language Models☆19Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆33Updated 10 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆32Updated 4 months ago
- development repository for PyInteraph2☆22Updated last week
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆38Updated 4 months ago
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆43Updated 2 weeks ago
- Interface-aware molecular generative framework for protein-protein interaction modulators☆13Updated 3 months ago
- ☆22Updated 10 months ago
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Updated 7 months ago
- Interaction profile extraction, scoring, alignment and evaluation of ShEPhERD. [ICLR 2025]☆20Updated 2 months ago
- Clusters protein chains based on CA distance difference☆14Updated last month
- protein structure generation with sparse all-atom denoising models☆29Updated last month
- ☆22Updated 5 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆44Updated 3 months ago
- ☆64Updated 2 weeks ago
- Protein-Ligand Binding Affinity Prediction with GNN and Transfer Learning From Protein Language Models☆22Updated 3 months ago
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆28Updated last year
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆28Updated this week
- Baseline model for PPB-Affinity benchmark data☆22Updated 3 months ago
- Extension of ThermoMPNN for double mutant predictions☆31Updated 3 weeks ago
- ☆48Updated 3 months ago