tommyhuangthu / EvoEF2Links
Physical energy function for protein sequence design
☆34Updated 2 years ago
Alternatives and similar repositories for EvoEF2
Users that are interested in EvoEF2 are comparing it to the libraries listed below
Sorting:
- ☆27Updated last month
- Universal framework for physically based computational protein design☆35Updated 2 years ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated 2 years ago
- The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability☆14Updated 2 years ago
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆28Updated last year
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆36Updated 3 years ago
- ☆71Updated 8 months ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆54Updated 3 years ago
- Making Protein folding accessible to all!☆24Updated last year
- ☆21Updated last year
- ☆20Updated 3 years ago
- ☆30Updated 10 months ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆50Updated last week
- code for SeqDance/ESMDance, biophysics-informed protein language models☆41Updated 8 months ago
- Efficient manipulation of protein structures in Python☆60Updated 2 months ago
- An accurate and efficient protein sequence design approach☆25Updated 8 months ago
- Some scripts that I keep using over and over.☆21Updated 5 months ago
- Scores for Hydrophobicity and Charges based on SASAs☆40Updated 5 months ago
- ☆36Updated last year
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 4 years ago
- ☆21Updated 3 years ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆70Updated last year
- ☆26Updated 3 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- ☆46Updated last year
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆82Updated 4 months ago
- ☆21Updated 2 years ago
- PPI version of Pythia☆25Updated 2 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆42Updated 6 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Updated last year