Physical energy function for protein sequence design
☆38May 6, 2023Updated 2 years ago
Alternatives and similar repositories for EvoEF2
Users that are interested in EvoEF2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Nov 10, 2023Updated 2 years ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆48Nov 4, 2025Updated 5 months ago
- Parametric Building of de novo Functional Topologies☆44Mar 11, 2022Updated 4 years ago
- ☆93Sep 7, 2022Updated 3 years ago
- ☆47Sep 16, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Fast and easy contact prediction.☆38May 24, 2024Updated last year
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Jun 27, 2025Updated 9 months ago
- ☆20Oct 4, 2022Updated 3 years ago
- EvoEF + evolutionary profile for ddG_bind prediction☆14Oct 17, 2025Updated 6 months ago
- ☆29Apr 2, 2026Updated 2 weeks ago
- Rifdock Library for Conformational Search☆172May 16, 2024Updated last year
- OPUS-Rota4: A Gradient-Based Protein Side-Chain Modeling Framework Assisted by Deep Learning-Based Predictors☆10Apr 14, 2022Updated 4 years ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆18May 2, 2021Updated 4 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Mar 25, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆71Aug 13, 2025Updated 8 months ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆23Mar 6, 2025Updated last year
- ☆31Oct 7, 2025Updated 6 months ago
- Universal framework for physically based computational protein design☆37Aug 19, 2023Updated 2 years ago
- ☆13Dec 5, 2024Updated last year
- ☆29Jul 10, 2020Updated 5 years ago
- Pretrainable geometric graph neural network for antibody affinity maturation☆73Mar 18, 2025Updated last year
- Protein Origami via Genetic Fusions☆18Sep 19, 2022Updated 3 years ago
- De novo design of small molecule binding sites into proteins☆12Apr 14, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- open source repository☆147Nov 30, 2023Updated 2 years ago
- Building more accurate protein structures from backbone torsion angles☆15Mar 21, 2025Updated last year
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆63Oct 28, 2025Updated 5 months ago
- ☆11Apr 25, 2021Updated 4 years ago
- ☆37Jan 15, 2023Updated 3 years ago
- ProteinFeatureAnalyzer extracts, analyzes and visualizes features from protein structures.☆14Mar 14, 2020Updated 6 years ago
- ☆399Aug 7, 2024Updated last year
- ☆20Apr 16, 2024Updated 2 years ago
- ☆10Feb 3, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆13Sep 29, 2023Updated 2 years ago
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated last year
- ☆18Mar 13, 2024Updated 2 years ago
- ☆23Jun 24, 2022Updated 3 years ago
- Deep convolutional networks for fold recognition☆22Nov 8, 2019Updated 6 years ago
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆157Oct 11, 2023Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago