Alternatives and similar repositories for EvoEF2

Users that are interested in EvoEF2 are comparing it to the libraries listed below

• Furman-Lab / PatchMAN
  ☆26Updated last month
• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆53Updated 3 years ago
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆28Updated last year
• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 3 years ago
• tommyhuangthu / UniDesign
  Universal framework for physically based computational protein design
  ☆35Updated 2 years ago
• RosettaCommons / Rosetta-DL
  A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons
  ☆36Updated 2 years ago
• skalyaanamoorthy / PSLMs
  ☆19Updated 10 months ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆20Updated 2 months ago
• PKUliujl / GeoSeqBuilder
  ☆28Updated 7 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆66Updated 2 months ago
• strauchlab / iNNterfaceDesign
  ☆20Updated 2 years ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆32Updated 2 years ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated 2 months ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆51Updated 7 months ago
• NRGlab / Surfaces
  ☆15Updated 2 weeks ago
• Nucleus2014 / protease-gcnn-pytorch
  ☆21Updated last year
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆23Updated last year
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆41Updated 3 months ago
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆52Updated 3 weeks ago
• bwicky / oligomer_hallucination
  ☆36Updated last year
• JosePereiraUA / rosetta-scripts
  Some Rosetta Scripts that allow for various simple tasks
  ☆14Updated 5 years ago
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆25Updated 6 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆57Updated this week
• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 6 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆52Updated 3 months ago
• JinyuanSun / DDGScan
  DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein
  ☆48Updated last year
• AmeyaHarmalkar / therML
  The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability
  ☆13Updated 2 years ago
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆36Updated 3 months ago
• ohuelab / ColabDesign-cyclic-binder
  ☆34Updated 2 years ago
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆35Updated last year