AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
☆63Aug 26, 2025Updated 6 months ago
Alternatives and similar repositories for AlphaLink2
Users that are interested in AlphaLink2 are comparing it to the libraries listed below
Sorting:
- AlphaLink: Integrating crosslinking MS data into OpenFold☆73Dec 14, 2023Updated 2 years ago
- ☆91Sep 25, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆71Jan 31, 2024Updated 2 years ago
- Source code and examples for AlphaFold Unmasked☆76Nov 25, 2025Updated 3 months ago
- XiSearch☆16Jan 27, 2026Updated last month
- ☆16Oct 3, 2023Updated 2 years ago
- An open-source platform for developing protein models beyond AlphaFold.☆413Jun 26, 2024Updated last year
- ☆15Jun 11, 2021Updated 4 years ago
- ResPRE is an algorithm for protein residue-residue contact-map prediction☆21May 20, 2019Updated 6 years ago
- a toolbox for the manipulation, modelling and analysis of molecular structures☆27Nov 27, 2025Updated 3 months ago
- Code for deep learning guided design of dynamic proteins☆32Jul 16, 2024Updated last year
- ProQDock is a Protein-Protein docking scoring program that uses high level coordinate driven features compiled and trained by a Support V…☆11Dec 11, 2021Updated 4 years ago
- Minimal AlphaFold☆56Aug 24, 2024Updated last year
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆21Apr 12, 2019Updated 6 years ago
- A collection of *fold* tools☆302Aug 8, 2025Updated 6 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆45May 22, 2025Updated 9 months ago
- Predict the binding affinity of protein-protein complexes from structural data☆177Oct 3, 2025Updated 4 months ago
- Tutorial files☆12Aug 7, 2024Updated last year
- Fast protein structure searching or your money back☆118Jan 14, 2026Updated last month
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆27Aug 12, 2021Updated 4 years ago
- Explicit crosslinks in AlphaFold 3☆23Mar 17, 2025Updated 11 months ago
- ProXL Web App -- Visualize and Share Protein Cross-linking Data☆13Feb 23, 2026Updated last week
- ☆15Mar 28, 2025Updated 11 months ago
- Structure prediction of alternative protein conformations☆82Feb 24, 2025Updated last year
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆98Aug 29, 2023Updated 2 years ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆274Feb 14, 2024Updated 2 years ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 3 months ago
- Protein Structure Archiver☆14Sep 10, 2025Updated 5 months ago
- ☆12Dec 2, 2024Updated last year
- Deploying synthetic coevolution and machine learning to engineer protein-protein interactions☆16Jul 30, 2023Updated 2 years ago
- Code for ColabDock paper☆151May 1, 2025Updated 10 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆62May 21, 2025Updated 9 months ago
- ☆110Feb 1, 2026Updated last month
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆175Oct 7, 2025Updated 4 months ago
- ☆25Apr 26, 2023Updated 2 years ago
- ☆303Updated this week
- A dependency-free cross-platform swiss army knife for PDB files.☆444Feb 3, 2026Updated 3 weeks ago
- UCBShift is a program for predicting chemical shifts for backbone atoms and β-carbon of a protein in solution. It utilizes a machine lear…☆24Jun 10, 2025Updated 8 months ago
- Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)☆16Sep 30, 2024Updated last year