songlab-cal / mogwai
☆25Updated 3 years ago
Alternatives and similar repositories for mogwai:
Users that are interested in mogwai are comparing it to the libraries listed below
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆58Updated 2 years ago
- ☆34Updated 4 years ago
- ☆34Updated last week
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Updated 2 years ago
- Deep convolutional networks for fold recognition☆22Updated 5 years ago
- Universal Transforming Geometric Network for protein structure prediction.☆8Updated 4 years ago
- Source code for ICLR 2021 paper: "Molecule Optimization by Explainable Evolution"☆28Updated 3 years ago
- ☆31Updated 4 years ago
- PLM-interact: extending protein language models to predict protein-protein interactions.☆20Updated 4 months ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 6 years ago
- A Modular Architecture for Deep Learning Systems☆40Updated this week
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Updated 3 years ago
- A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. …☆22Updated last year
- Faster, more accurate and entirely open source method for predicting contacts in proteins☆12Updated 6 years ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆35Updated 3 years ago
- Massively-Parallel Natural Extension of Reference Frame☆31Updated 2 years ago
- ☆29Updated last year
- ☆25Updated 5 years ago
- Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10.1101/2021.08.02.454840v1☆37Updated 2 years ago
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆18Updated 3 years ago
- SE(3)-equivariant point cloud networks for virtual screening☆20Updated 2 years ago
- Inpainting protein sequence and structure☆12Updated last year
- AmoebaContact is a program for multi-cutoff protein contact prediction which starts from target sequence alone. Different from traditiona…☆9Updated 5 years ago
- Homology reduced UniProt, train-/valid-/testsets for language modeling☆16Updated 3 years ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆96Updated 2 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆57Updated 3 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- ☆46Updated 5 months ago
- Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)☆14Updated 7 months ago
- pytorch implementation of trDesign☆45Updated 4 years ago