songlab-cal / mogwaiLinks
☆25Updated 3 years ago
Alternatives and similar repositories for mogwai
Users that are interested in mogwai are comparing it to the libraries listed below
Sorting:
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆58Updated 2 years ago
- ☆34Updated 4 years ago
- Deep convolutional networks for fold recognition☆22Updated 5 years ago
- ☆32Updated last month
- PLM-interact: extending protein language models to predict protein-protein interactions.☆30Updated 3 weeks ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆36Updated 4 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Updated 3 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 6 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- Open source code for AlphaFold to extract protein embeddings☆27Updated 4 years ago
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Updated 3 years ago
- ☆36Updated 6 years ago
- Template with code & dataset for the "Structural basis for solubility in protein expression systems" challenge at the Copenhagen Bioinfor…☆22Updated 4 years ago
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Updated 3 years ago
- ☆132Updated 3 years ago
- ☆18Updated 7 years ago
- Deep learning protein-protein binding sites prediction☆20Updated 2 years ago
- ☆18Updated 6 months ago
- Faster, more accurate and entirely open source method for predicting contacts in proteins☆12Updated 7 years ago
- Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)☆15Updated 11 months ago
- Homology reduced UniProt, train-/valid-/testsets for language modeling☆16Updated 3 years ago
- ☆35Updated 4 months ago
- Inpainting protein sequence and structure☆12Updated last year
- deep protein solubility prediction☆39Updated 6 years ago
- pytorch implementation of trDesign☆45Updated 4 years ago
- Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities☆30Updated last year
- ☆18Updated last year
- ☆26Updated 5 years ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆99Updated 2 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago