TurtleTools / geometricusLinks
A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
☆41Updated 2 years ago
Alternatives and similar repositories for geometricus
Users that are interested in geometricus are comparing it to the libraries listed below
Sorting:
- Fast and accurate protein structure prediction☆56Updated last year
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆34Updated 4 months ago
- ☆23Updated 2 months ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆39Updated 4 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- ☆47Updated last year
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- ☆32Updated 3 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆61Updated 9 months ago
- ML toolset for creating TED: The Encyclopedia of Domains☆25Updated 7 months ago
- Python package to atom map, correct and suggest enzymatic reactions☆41Updated last year
- Python package to manage protein structures and their annotations☆45Updated last year
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 6 years ago
- Graph Network for protein-protein interface including language model features☆34Updated last year
- Fast protein structure searching or your money back☆118Updated this week
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Machine learning prediction of enzyme optimum pH☆50Updated 8 months ago
- ☆36Updated last year
- Results and data from the pilot round of the Protein Engineering Tournament☆30Updated 9 months ago
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆27Updated 2 years ago
- ☆77Updated last year
- The DSSP building software☆48Updated 2 years ago
- GTalign, high-performance protein structure alignment, superposition and search☆52Updated 4 months ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆26Updated last year
- Detection of remote homology by comparison of protein language model representations☆61Updated last year
- 2D portraits of 3D protein structures☆27Updated 3 months ago
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆31Updated 3 years ago
- Ultra-fast in-silico structure mutation☆36Updated 9 months ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated last year
- Direct coupling analysis software for protein and RNA sequences☆56Updated 5 months ago