TurtleTools / geometricusLinks
A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
☆37Updated 2 years ago
Alternatives and similar repositories for geometricus
Users that are interested in geometricus are comparing it to the libraries listed below
Sorting:
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆45Updated 2 weeks ago
- Fast and accurate protein structure prediction☆53Updated 5 months ago
- Python package to atom map, correct and suggest enzymatic reactions☆38Updated last year
- ☆40Updated 9 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆29Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated 2 months ago
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆29Updated 2 years ago
- A domain parser for Alphafold models☆38Updated last year
- ☆36Updated 8 months ago
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆24Updated 3 months ago
- Non-sequential structural alignment program for protein structure☆19Updated 8 months ago
- Results and data from the pilot round of the Protein Engineering Tournament☆29Updated 3 months ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- 2D portraits of 3D protein structures☆22Updated 2 months ago
- Fast protein domain structure embedding+search tool☆21Updated last month
- ☆68Updated 8 months ago
- Ultra-fast in-silico structure mutation☆34Updated 2 months ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 6 months ago
- Python package to manage protein structures and their annotations☆43Updated last year
- Predict the structure of immune receptor proteins☆49Updated 7 months ago
- ☆30Updated last year
- Learning with uncertainty for biological discovery and design☆34Updated 2 years ago
- ☆21Updated last month
- Evolutionary velocity with protein language models☆93Updated last year
- ☆30Updated last month
- ML toolset for creating TED: The Encyclopedia of Domains☆21Updated 3 weeks ago
- Biological prediction models made simple.☆43Updated last month
- ☆57Updated 8 months ago
- Graph Network for protein-protein interface including language model features☆32Updated last year