Alternatives and similar repositories for geometricus:

Users that are interested in geometricus are comparing it to the libraries listed below

• TurtleTools / portein
  2D portraits of 3D protein structures
  ☆20Updated last year
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆32Updated 2 years ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆51Updated 2 months ago
• JudeWells / chainsaw
  ☆32Updated 6 months ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆29Updated last week
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆32Updated 2 years ago
• wells-wood-research / PDBench
  PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
  ☆28Updated 2 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆57Updated 3 years ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆53Updated 4 months ago
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆22Updated 3 weeks ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆34Updated last year
• ShintaroMinami / mican
  Non-sequential structural alignment program for protein structure
  ☆19Updated 5 months ago
• sokrypton / seqmodels
  ☆30Updated 4 years ago
• hesther / enzymemap
  Python package to atom map, correct and suggest enzymatic reactions
  ☆36Updated 11 months ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆28Updated last year
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆29Updated 11 months ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆42Updated last year
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆50Updated last year
• minmarg / gtalign_alpha
  GTalign, HPC protein structure alignment, superposition and search (alpha release)
  ☆42Updated 2 months ago
• TattaBio / gLM2
  ☆61Updated 5 months ago
• psipred / ted-tools
  ML toolset for creating TED: The Encyclopedia of Domains
  ☆16Updated this week
• jertubiana / ProteinMotifRBM
  Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox
  ☆20Updated 6 years ago
• TobiasHeOl / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆15Updated 2 weeks ago
• tymor22 / tm-vec
  ☆66Updated 6 months ago
• tristanic / pae_to_domains
  Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix
  ☆35Updated 2 years ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆34Updated 4 years ago
• kad-ecoli / BeEM
  Conversion of PDBx/mmCIF files to best effort/minimal PDB files
  ☆16Updated 4 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆70Updated 2 months ago
• greener-group / progres
  Fast protein structure searching or your money back
  ☆95Updated last month
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆49Updated 3 months ago