BioinfoMachineLearning / CDPredLinks
Deep transformer for predicting interchain residue-residue distances of protein complexes
☆12Updated last year
Alternatives and similar repositories for CDPred
Users that are interested in CDPred are comparing it to the libraries listed below
Sorting:
- ☆27Updated last week
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆54Updated 3 years ago
- Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"☆24Updated 3 months ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 4 years ago
- Physical energy function for protein sequence design☆34Updated 2 years ago
- ☆28Updated 3 years ago
- ☆17Updated last year
- ☆25Updated 3 years ago
- Making Protein folding accessible to all!☆25Updated last year
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆27Updated 2 years ago
- Calculate the RMSD between two protein structures☆12Updated 3 years ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆40Updated 4 years ago
- Open source code for AlphaFold.☆38Updated 3 years ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆16Updated 4 years ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆46Updated 2 years ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆70Updated last year
- ☆23Updated 7 months ago
- Structure-Informed Protein Language Model☆36Updated last year
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Updated last year
- Official open-source of Antibody Design Using a Score-based Diffusion Model Guided by Evolutionary, Physical, and Geometric Constraints☆43Updated 5 months ago
- ☆52Updated last year
- ☆39Updated last year
- Public version for Distance-AF☆29Updated 4 months ago
- Tool for modelling the CDRs of antibodies☆33Updated 3 years ago
- ☆34Updated 2 years ago
- ☆15Updated last year
- ☆21Updated 3 years ago
- Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"☆31Updated 3 years ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Updated 2 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆60Updated 2 weeks ago