BioinfoMachineLearning / CDPredLinks
Deep transformer for predicting interchain residue-residue distances of protein complexes
☆12Updated last year
Alternatives and similar repositories for CDPred
Users that are interested in CDPred are comparing it to the libraries listed below
Sorting:
- Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"☆24Updated last week
- ☆26Updated last month
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆53Updated 3 years ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Updated last year
- Open source code for AlphaFold.☆39Updated 2 years ago
- ☆39Updated last year
- Evaluating Protein Binding Interfaces with Transformer Networks☆47Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated 2 years ago
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆27Updated 2 years ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 3 years ago
- ☆28Updated 7 months ago
- Calculate the RMSD between two protein structures☆12Updated 3 years ago
- ☆17Updated last year
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆69Updated last year
- Making Protein folding accessible to all!☆24Updated last year
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆16Updated 4 years ago
- DISTEVAL: A web-server for evaluating protein inter-residue distances☆18Updated 3 years ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆39Updated 4 years ago
- ☆22Updated 4 months ago
- ☆19Updated 10 months ago
- Deploying synthetic coevolution and machine learning to engineer protein-protein interactions☆16Updated 2 years ago
- ☆25Updated 3 years ago
- Physical energy function for protein sequence design☆33Updated 2 years ago
- Tool for modelling the CDRs of antibodies☆32Updated 2 years ago
- ☆15Updated last year
- An antibody-specific language model focusing on NGL prediction☆31Updated last year
- ☆72Updated 5 years ago
- Public version for Distance-AF☆22Updated last month
- Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language models☆39Updated 9 months ago
- Extension of ThermoMPNN for double mutant predictions☆43Updated last month