Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will update this as soon as possible.
☆99Jan 26, 2022Updated 4 years ago
Alternatives and similar repositories for RaptorX-3DModeling
Users that are interested in RaptorX-3DModeling are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Deep residual neural network for protein contact/distance prediction developed by Xu group☆79Sep 13, 2020Updated 5 years ago
- A package to predict protein inter-residue geometries from sequence data☆222Sep 27, 2021Updated 4 years ago
- Python 3 implementation of Jinbo Xu's paper "Distance-based protein folding powered by deep learning", PNAS August 20, 2019 116 (34)☆20Aug 2, 2022Updated 3 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Jan 30, 2022Updated 4 years ago
- ☆20May 7, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.☆90Jun 18, 2021Updated 4 years ago
- Deep ResNet-based protein contact prediction☆19Mar 30, 2020Updated 6 years ago
- Deep convolutional neural networks for protein contact map prediction☆23Aug 5, 2019Updated 6 years ago
- ☆29Jul 10, 2020Updated 5 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆114Nov 8, 2023Updated 2 years ago
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Mar 7, 2025Updated last year
- Graph Learning of INTER-protein contacts☆10Feb 20, 2022Updated 4 years ago
- ResPRE is an algorithm for protein residue-residue contact-map prediction☆21May 20, 2019Updated 7 years ago
- Contact map alignment☆44Feb 3, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- trRosetta for protein design☆183May 15, 2021Updated 5 years ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆36May 30, 2021Updated 5 years ago
- Improved ab initio protein structure reconstruction☆15Mar 7, 2018Updated 8 years ago
- ☆93Sep 7, 2022Updated 3 years ago
- DeepContact Software☆26Jun 16, 2018Updated 7 years ago
- ☆40Apr 24, 2018Updated 8 years ago
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Aug 5, 2021Updated 4 years ago
- Guided Conditional Wasserstein GAN for De Novo Protein Design☆35Feb 23, 2021Updated 5 years ago
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆19May 6, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆26May 9, 2022Updated 4 years ago
- ☆13Jan 12, 2021Updated 5 years ago
- MEGADOCK on Google Colaboratory☆20Oct 2, 2023Updated 2 years ago
- Remote protein homology detection suite.☆622Aug 12, 2025Updated 10 months ago
- An all-atom protein structure dataset for machine learning.☆364Mar 16, 2024Updated 2 years ago
- Attempt at reproduction of AlphaFold2☆98Oct 23, 2024Updated last year
- Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design☆697Feb 27, 2026Updated 3 months ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆83Aug 27, 2021Updated 4 years ago
- AlphaLink: Integrating crosslinking MS data into OpenFold☆76Dec 14, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 4 years ago
- ProteinGCN: Protein model quality assessment using Graph Convolutional Networks☆119Jul 25, 2024Updated last year
- Python/TF1 implementation of DeepAccNet (https://www.biorxiv.org/content/10.1101/2020.07.17.209643v1)☆10Sep 2, 2020Updated 5 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆123Sep 18, 2021Updated 4 years ago
- A bash script for an automated Rosetta Abinitio folding simulation on an HPC☆11Aug 29, 2020Updated 5 years ago
- A protein 3D structure prediction application☆67May 5, 2021Updated 5 years ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆60Oct 17, 2022Updated 3 years ago