j3xugit / RaptorX-3DModelingLinks
Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will update this as soon as possible.
☆99Updated 3 years ago
Alternatives and similar repositories for RaptorX-3DModeling
Users that are interested in RaptorX-3DModeling are comparing it to the libraries listed below
Sorting:
- Deep residual neural network for protein contact/distance prediction developed by Xu group☆79Updated 5 years ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆57Updated 3 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆121Updated 4 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆111Updated 2 years ago
- Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.☆90Updated 4 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆94Updated 2 years ago
- Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.☆59Updated 4 years ago
- trRosetta for protein design☆183Updated 4 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Updated 3 years ago
- ☆108Updated 2 years ago
- ☆114Updated 3 years ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆130Updated 4 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆110Updated last year
- A Python 3 version of the protein descriptor package propy☆46Updated 2 years ago
- ☆137Updated 6 months ago
- Create DSSP and HSSP files☆94Updated last year
- Protein design and variant prediction using autoregressive generative models☆117Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆81Updated 2 years ago
- Paratope Prediction using Deep Learning☆61Updated 2 years ago
- Attempt at reproduction of AlphaFold2☆99Updated last year
- open source repository☆143Updated 2 years ago
- ☆35Updated 4 years ago
- Antibody-Antigen Docking and Affinity Benchmark☆75Updated 5 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆43Updated 6 years ago
- AbLang: A language model for antibodies☆155Updated 2 years ago
- Improved antibody structure-based design using inverse folding☆147Updated 3 weeks ago
- An evolutionary context-integrated deep learning framework for protein engineering☆66Updated 3 years ago
- RNA Multiple Sequence Alignment☆47Updated 2 years ago
- ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…☆119Updated 2 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆61Updated 3 weeks ago