j3xugit / RaptorX-3DModelingLinks
Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will update this as soon as possible.
☆100Updated 3 years ago
Alternatives and similar repositories for RaptorX-3DModeling
Users that are interested in RaptorX-3DModeling are comparing it to the libraries listed below
Sorting:
- Deep residual neural network for protein contact/distance prediction developed by Xu group☆79Updated 4 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆115Updated 3 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆108Updated last year
- trRosetta for protein design☆179Updated 4 years ago
- Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.☆87Updated 4 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆87Updated last year
- ☆108Updated 2 years ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆55Updated 2 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆58Updated 3 years ago
- Improved antibody structure-based design using inverse folding☆126Updated last month
- ☆106Updated last year
- Protein design and variant prediction using autoregressive generative models☆106Updated last year
- ☆128Updated last week
- Code for our paper "Protein sequence design with a learned potential"☆79Updated last year
- source code for https://arxiv.org/abs/2005.11248 "Accelerating Antimicrobial Discovery with Controllable Deep Generative Models and Molec…☆102Updated 2 years ago
- Official repository of EnzymeFlow☆92Updated 6 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆100Updated 8 months ago
- Predict the structure of immune receptor proteins☆141Updated 4 months ago
- Generative Language Modeling for Antibody Design☆151Updated 8 months ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆73Updated last month
- Masif seed paper repository☆154Updated 2 years ago
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆134Updated last year
- ☆117Updated 2 years ago
- Attempt at reproduction of AlphaFold2☆92Updated 8 months ago
- ☆58Updated 2 years ago
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆159Updated 2 years ago
- AbLang: A language model for antibodies☆142Updated last year
- Predict the binding affinity of protein-protein complexes from structural data☆137Updated 2 months ago
- Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.☆60Updated 4 years ago
- A compilation of deep learning methods for protein design☆97Updated 2 years ago