Alternatives and similar repositories for carbonmatrix_public:

Users that are interested in carbonmatrix_public are comparing it to the libraries listed below

• levinthal / Pallatom
  ☆91Updated 5 months ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆156Updated 2 months ago
• ai4protein / ProSST
  Code for ProSST: A Pre-trained Protein Sequence and Structure Transformer with Disentangled Attention.
  ☆109Updated last month
• ai4protein / Pro-FSFP
  Pro-FSFP: Few-Shot Protein Fitness Prediction
  ☆80Updated 3 months ago
• ikalvet / heme_binder_diffusion
  ☆119Updated 6 months ago
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆58Updated 3 weeks ago
• ai4protein / VenusFactory
  🏭 Easy data acquisition, benchmark resources, PLM fine-tuning for bio-researchers.
  ☆65Updated this week
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆68Updated 3 months ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆85Updated 4 months ago
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆57Updated 10 months ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆73Updated 9 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• wengong-jin / DSMBind
  ☆85Updated 5 months ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆112Updated 3 weeks ago
• ai4protein / Pro-Prime
  ☆53Updated 3 months ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆88Updated last month
• baker-laboratory / PLACER
  PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
  ☆111Updated last month
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆39Updated 4 months ago
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆46Updated 4 months ago
• westlake-repl / SaprotHub
  Making Protein Modeling Accessible to All Biologists
  ☆106Updated last week
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆53Updated last month
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆95Updated last month
• Kuhlman-Lab / evopro
  ☆77Updated last month
• bytedance / Protenix-Dock
  An accurate and trainable end-to-end protein-ligand docking framework
  ☆80Updated 3 weeks ago
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆90Updated last year
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆103Updated last month
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆111Updated 3 weeks ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆213Updated 8 months ago
• HBioquant / DiffBindFR
  Diffusion model based protein-ligand flexible docking method
  ☆104Updated 5 months ago
• wengong-jin / abdockgen
  ☆106Updated 2 years ago