Alternatives and similar repositories for TopoDiff:

Users that are interested in TopoDiff are comparing it to the libraries listed below

• johnnytam100 / AlphaCutter
  This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
  ☆15Updated last year
• PKUliujl / GeoSeqBuilder
  ☆24Updated this week
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆29Updated last month
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆34Updated last month
• HannesStark / CodonMPNN
  ☆24Updated last month
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆39Updated last month
• sokrypton / roscon2024
  Tutorial files
  ☆11Updated 5 months ago
• ComputArtCMCG / ProBID-NET
  ☆14Updated 3 months ago
• davidekim / parametric_barrels
  ☆10Updated this week
• anirudhvenk / antibody-dpo
  ☆14Updated 2 weeks ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆30Updated last month
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆19Updated this week
• skalyaanamoorthy / PSLMs
  ☆15Updated 2 months ago
• bzho3923 / CPDiffusion
  ☆19Updated 3 months ago
• Ryan-Hu-Hu-Hu / GRACE
  GRACE: Generative Renaissance in Artificial Computational Enzyme Design
  ☆14Updated last week
• bene837 / af2seq
  ☆41Updated 4 months ago
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆27Updated 5 months ago
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆17Updated 6 months ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆18Updated 3 weeks ago
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆35Updated last month
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆9Updated 4 years ago
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆29Updated this week
• liuyf020419 / SCUBA-D
  ☆51Updated 9 months ago
• bwicky / oligomer_hallucination
  ☆36Updated last year
• decodermu / GPD
  Graphormer Based Protein Sequence Design
  ☆24Updated 11 months ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆26Updated last year
• ShenLab / SeqDance
  code for SeqDance, a biophysics-informed protein language model
  ☆20Updated 2 months ago
• CSUBioGroup / DPFunc
  ☆17Updated this week
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆32Updated 4 months ago