Alternatives and similar repositories for TopoDiff:

Users that are interested in TopoDiff are comparing it to the libraries listed below

• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆21Updated 5 years ago
• davidekim / parametric_barrels
  ☆12Updated last month
• microsoft / seq2symm
  Homomer symmetry prediction from protein sequence
  ☆20Updated 2 weeks ago
• PKUliujl / GeoSeqBuilder
  ☆26Updated last month
• ComputArtCMCG / ProBID-NET
  ☆14Updated 5 months ago
• johnnytam100 / AlphaCutter
  This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
  ☆15Updated last year
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆13Updated last month
• HannesStark / CodonMPNN
  ☆27Updated 3 months ago
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆31Updated 3 months ago
• bwicky / oligomer_hallucination
  ☆36Updated last year
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆17Updated 8 months ago
• anirudhvenk / antibody-dpo
  ☆17Updated 2 months ago
• skalyaanamoorthy / PSLMs
  ☆18Updated 4 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆34Updated 4 months ago
• sokrypton / roscon2024
  Tutorial files
  ☆11Updated 7 months ago
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆32Updated 4 months ago
• kiharalab / NuFold
  NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation
  ☆30Updated last month
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆18Updated 2 months ago
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆28Updated last month
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆38Updated 4 months ago
• violet-sto / Bridge-IF
  Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"
  ☆12Updated last week
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆30Updated 7 months ago
• ShenLab / SeqDance
  code for SeqDance, a biophysics-informed protein language model
  ☆23Updated 5 months ago
• bzho3923 / CPDiffusion
  ☆21Updated 5 months ago
• decodermu / GPD
  Graphormer Based Protein Sequence Design
  ☆24Updated last year
• bene837 / af2seq
  ☆43Updated 6 months ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆31Updated last year
• alepandini / DyNoPy
  DyNoPy
  ☆11Updated 6 months ago
• Furman-Lab / PatchMAN
  ☆26Updated 7 months ago
• Huatsing-Lau / PPB-Affinity-DataPrepWorkflow
  workflow used to prepare PPB-Affinity database
  ☆17Updated 7 months ago