Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"
☆48Aug 5, 2025Updated last year
Alternatives and similar repositories for TopoDiff
Users that are interested in TopoDiff are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Dec 23, 2024Updated last year
- ☆29May 26, 2026Updated 4 months ago
- The pytorch code of TDFold☆21Feb 25, 2026Updated 7 months ago
- ☆65Apr 9, 2024Updated 2 years ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 10 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆33Dec 12, 2024Updated last year
- Official repository for DiffPepBuilder and DiffPepDock tools☆134Oct 24, 2025Updated 11 months ago
- ☆34Feb 5, 2025Updated last year
- ☆15Mar 28, 2025Updated last year
- HBDesigner is an algorithm that designs highly-connected hydrogen bonding networks that fit the requested design constraints onto an inpu…☆21Oct 2, 2026Updated last week
- Extension of ThermoMPNN for double mutant predictions☆66Mar 23, 2026Updated 6 months ago
- ☆13May 18, 2025Updated last year
- Efficient manipulation of protein structures in Python☆68Jun 16, 2026Updated 3 months ago
- ☆10Apr 1, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆31Mar 4, 2025Updated last year
- bakerlab pymol scripts☆27Feb 6, 2020Updated 6 years ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆276Sep 9, 2026Updated last month
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆89Jul 2, 2025Updated last year
- Official code release for Ambient Protein Diffusion☆35Aug 30, 2025Updated last year
- Source code of Venus-MAXWELL: Efficient Learning of Protein-Mutation Stability Landscapes using Protein Language Models☆31Updated this week
- ☆43Jul 28, 2025Updated last year
- [NeurIPS 25 Spotlight] Protein Design with Dynamic Protein Vocabulary☆22Nov 23, 2025Updated 10 months ago
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Sidechain conditioning and modeling for full-atom protein sequence design☆150Nov 11, 2025Updated 10 months ago
- protein backbone refinement☆16Sep 12, 2024Updated 2 years ago
- Inference code for RFdiffusion2☆448Apr 3, 2026Updated 6 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆84Aug 27, 2026Updated last month
- Tutorial files☆12Aug 7, 2024Updated 2 years ago
- Implementation of MapDiff: "Mask-prior-guided denoising diffusion improves inverse protein folding" in PyTorch☆49Jul 11, 2025Updated last year
- ☆189Jul 24, 2026Updated 2 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Aug 10, 2023Updated 3 years ago
- Fast protein structure searching or your money back☆119Apr 13, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- MiniFold: Simple, Fast and Accurate Protein Structure Prediction☆96Jul 10, 2025Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆74Aug 4, 2026Updated 2 months ago
- Aligning protein generative models with experimental fitness☆152Mar 12, 2026Updated 6 months ago
- ☆84Jun 10, 2026Updated 3 months ago
- Program to plot a Ramachandran plot of all dihedral angles from a given PDB file. Background is empirically generated from the peptides …☆14Feb 25, 2025Updated last year
- ☆21Nov 21, 2025Updated 10 months ago
- Official Implementation of AMix-1, a Test-Time Scalable Protein Language Model.☆30Dec 10, 2025Updated 10 months ago