A simplified implementation of DSSP algorithm for PyTorch and NumPy
☆97Jun 9, 2025Updated 9 months ago
Alternatives and similar repositories for PyDSSP
Users that are interested in PyDSSP are comparing it to the libraries listed below
Sorting:
- Application to assign secondary structure to proteins☆250Mar 4, 2026Updated 2 weeks ago
- bakerlab pymol scripts☆26Feb 6, 2020Updated 6 years ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆45May 22, 2025Updated 9 months ago
- Compressing protein structures effectively with torsion angles☆189Feb 10, 2026Updated last month
- Making Protein Design accessible to all via Google Colab!☆894Mar 10, 2026Updated last week
- A high performance drop-in replacement for Biotite's PDBFile.☆41May 27, 2025Updated 9 months ago
- Potts model-based protein sequence design☆83Mar 13, 2026Updated last week
- Fast protein structure searching or your money back☆118Updated this week
- Some scripts that I keep using over and over.☆21Jul 5, 2025Updated 8 months ago
- ☆11Mar 12, 2026Updated last week
- protein structure generation with sparse all-atom denoising models☆60Feb 25, 2026Updated 3 weeks ago
- ☆27Feb 10, 2024Updated 2 years ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆137Nov 11, 2025Updated 4 months ago
- ☆92Sep 25, 2024Updated last year
- TMol☆62Updated this week
- Multiple Protein Structure Alignment at Scale with FoldMason☆258Jan 31, 2026Updated last month
- What exactly are the non-canonical amino acids in the Rosetta database folder?☆12Feb 16, 2020Updated 6 years ago
- Fast indexing and search of discontinuous motifs in protein structures☆127Feb 24, 2026Updated 3 weeks ago
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 4 years ago
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…☆65Oct 31, 2025Updated 4 months ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆177Oct 7, 2025Updated 5 months ago
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆10Jan 7, 2026Updated 2 months ago
- A collection of *fold* tools☆302Aug 8, 2025Updated 7 months ago
- ☆70Feb 13, 2026Updated last month
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 2 years ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆98Aug 29, 2023Updated 2 years ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 4 months ago
- ☆211Apr 21, 2025Updated 10 months ago
- Source code and examples for AlphaFold Unmasked☆78Nov 25, 2025Updated 3 months ago
- Homomer symmetry prediction from protein sequence☆42Mar 13, 2025Updated last year
- ☆42Aug 29, 2025Updated 6 months ago
- ☆37Dec 21, 2023Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆72Jan 31, 2024Updated 2 years ago
- Protein hallucination and inpainting with RoseTTAFold☆280Mar 30, 2023Updated 2 years ago
- Python package to manage protein structures and their annotations☆45Feb 22, 2024Updated 2 years ago
- ☆61Apr 9, 2024Updated last year
- Diffusion-based all-atom protein generative model.☆233Aug 27, 2025Updated 6 months ago
- Run OpenMM with forces provided by any Python program☆39Dec 25, 2024Updated last year
- Rank binders by structure modeling☆16Mar 10, 2025Updated last year