ShintaroMinami / PyDSSPLinks
A simplified implementation of DSSP algorithm for PyTorch and NumPy
☆91Updated 3 months ago
Alternatives and similar repositories for PyDSSP
Users that are interested in PyDSSP are comparing it to the libraries listed below
Sorting:
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆96Updated 2 years ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆96Updated 5 months ago
- ☆86Updated 11 months ago
- Python interface for the RCSB PDB search API.☆64Updated 5 months ago
- ☆75Updated 7 months ago
- Source code and examples for AlphaFold Unmasked☆73Updated 3 months ago
- ☆112Updated 2 years ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆117Updated 2 months ago
- ☆87Updated last month
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆69Updated last year
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆161Updated last month
- Extension of ThermoMPNN for double mutant predictions☆43Updated last month
- ☆205Updated last month
- Protein folding in Pymol☆109Updated 8 months ago
- Python bindings for the TM-align algorithm and code for protein structure comparison developed by Zhang et al.☆58Updated 9 months ago
- Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.☆88Updated 3 weeks ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆133Updated 10 months ago
- Modelling of Large Protein Complexes☆37Updated last month
- Official repository for DiffPepBuilder and DiffPepDock tools☆100Updated 2 weeks ago
- Structure prediction of alternative protein conformations☆78Updated 6 months ago
- Central repository for biomolecular foundation models with shared trainers and pipeline components☆138Updated last week
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆72Updated last month
- Open source code for AlphaFold.☆39Updated 2 years ago
- Efficient manipulation of protein structures in Python☆56Updated last week
- ☆71Updated 5 months ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆48Updated 2 months ago
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆48Updated last year
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆65Updated 2 months ago
- Dataset and package for working with protein-protein interactions in 3D☆96Updated 4 months ago