Explicit crosslinks in AlphaFold 3
☆23Mar 17, 2025Updated last year
Alternatives and similar repositories for alphafold3x
Users that are interested in alphafold3x are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- P2DFlow: A Protein Ensemble Generative Model with SE(3) Flow Matching☆44May 22, 2025Updated 10 months ago
- A Nextflow pipeline that creates reliable, structure-informed MSAs of thousands of protein sequences which can supplement structural info…☆11Nov 19, 2025Updated 4 months ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- ☆10Oct 31, 2025Updated 4 months ago
- Modelling protein conformational landscape with Alphafold☆56Aug 29, 2025Updated 6 months ago
- ☆33Feb 25, 2024Updated 2 years ago
- ☆25Apr 26, 2023Updated 2 years ago
- ☆11Mar 28, 2024Updated last year
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆40Sep 27, 2024Updated last year
- ☆92Sep 25, 2024Updated last year
- Code for ApoDock☆21Apr 7, 2025Updated 11 months ago
- PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion☆13Jul 4, 2024Updated last year
- ☆16Oct 3, 2023Updated 2 years ago
- DSDPFlex: Flexible-Receptor Docking with GPU Acceleration☆24Dec 24, 2025Updated 3 months ago
- Code for deep learning guided design of dynamic proteins☆32Jul 16, 2024Updated last year
- rebuilds and completes models of protein complexes using AlphaFold2☆16Mar 6, 2026Updated 2 weeks ago
- [ICML 2024] Floating Anchor Diffusion Model for Multi-motif Scaffolding☆31Aug 23, 2024Updated last year
- Pharmacophore Elucidation with Convolutional Neural Networks and Reinforcement Learning☆17Apr 7, 2025Updated 11 months ago
- ☆22Dec 15, 2024Updated last year
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆177Oct 7, 2025Updated 5 months ago
- ☆15Jun 3, 2025Updated 9 months ago
- ☆66Apr 8, 2025Updated 11 months ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆63Aug 26, 2025Updated 6 months ago
- Clusters protein chains based on CA distance difference☆16Updated this week
- Official Implementation of CompassDock☆21Feb 13, 2026Updated last month
- Official implementation of RuSH (Scaffold Hopping with Generative Reinforcement Learning). Includes ScaffoldFinder algorithm for 2D decor…☆21Feb 20, 2025Updated last year
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆34Nov 18, 2023Updated 2 years ago
- Toolkit for alphafold3 input and output files☆97Mar 1, 2026Updated 3 weeks ago
- A tool for protein and protein complex structure prediction.☆29Jun 13, 2025Updated 9 months ago
- Webserver & command-line tool for search of APO (unbound) protein structures from HOLO (bound) forms and vice versa. http://apoholo.cz☆18Jun 14, 2024Updated last year
- AlphaLink: Integrating crosslinking MS data into OpenFold☆74Dec 14, 2023Updated 2 years ago
- mmCIF-based extension dictionary for computed structure models☆24Feb 5, 2026Updated last month
- MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.☆24Mar 3, 2026Updated 2 weeks ago
- Histidine Protonation State Optimizer for setting up MD simulations based on semi-empirical QM resonance☆20Mar 6, 2026Updated 2 weeks ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆63May 21, 2025Updated 10 months ago
- ☆15Apr 3, 2025Updated 11 months ago
- ☆21Oct 26, 2024Updated last year
- ☆32Mar 2, 2026Updated 3 weeks ago
- SubPEx (Sub-Pocket Explorer) is a tool to enhance ensemble (multiple-receptor/relaxed-complex) virtual screening. It uses weighted ensemb…☆18Jun 30, 2025Updated 8 months ago