Alternatives and similar repositories for deepcontact

Users that are interested in deepcontact are comparing it to the libraries listed below

• psipred / DeepCov
  Fully convolutional neural networks for protein residue-residue contact prediction
  ☆43Updated 6 years ago
• psipred / DMPfold
  De novo protein structure prediction using iteratively predicted structural constraints
  ☆60Updated 3 years ago
• sameerkhurana10 / DSOL_rv0.2
  deep protein solubility prediction
  ☆40Updated 6 years ago
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆61Updated 7 months ago
• realbigws / RaptorX_Property_Fast
  RaptorX-Property: a Standalone Package for Protein Structure Property Prediction
  ☆18Updated 6 years ago
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆53Updated 3 months ago
• sokrypton / map_align
  Contact map alignment
  ☆41Updated 4 years ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆70Updated last year
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆34Updated last month
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆58Updated 3 months ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆70Updated 8 years ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆61Updated 3 months ago
• duolinwang / MusiteDeep_web
  This repository contains the stand-alone tool for MusiteDeep server
  ☆34Updated 4 years ago
• gitter-lab / nn4dms
  Neural networks for deep mutational scanning data
  ☆70Updated 4 months ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆60Updated 6 months ago
• churchlab / UniRep-analysis
  Analysis and figure code from Alley et al. 2019.
  ☆59Updated 2 years ago
• ElwynWang / DeepFragLib
  ☆29Updated 5 years ago
• cmbi / dssp
  The DSSP building software
  ☆47Updated 2 years ago
• pagnani / PlmDCA.jl
  Pseudo Likelihood Maximization for protein in Julia
  ☆51Updated 5 months ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 5 years ago
• multicom-toolbox / DNCON2
  Deep convolutional neural networks for protein contact map prediction
  ☆23Updated 6 years ago
• leeyang / ResPRE
  ResPRE is an algorithm for protein residue-residue contact-map prediction
  ☆21Updated 6 years ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• soedinglab / pdbx
  pdbx is a parser module in python for structures of the protein data bank in the mmcif format
  ☆29Updated last year
• ba-lab / pdnet
  PDNET: A fully open-source framework for deep learning protein real-valued distances
  ☆36Updated 4 years ago
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆23Updated 4 years ago
• Faezov / PDBrenum
  ☆30Updated 5 months ago
• sokrypton / GREMLIN_CPP
  GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
  ☆57Updated 3 years ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆25Updated last year