Zuricho / ParallelFoldLinks
Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures
☆170Updated last year
Alternatives and similar repositories for ParallelFold
Users that are interested in ParallelFold are comparing it to the libraries listed below
Sorting:
- Install alphafold on the local machine, get out of docker.☆104Updated 3 years ago
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆164Updated last year
- Bilingual Language Model for Protein Sequence and Structure☆274Updated 9 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆164Updated 6 months ago
- Efficient evolution from protein language models☆217Updated 2 years ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆366Updated last year
- ☆295Updated last week
- Evolutionary couplings from protein and RNA sequence alignments☆284Updated this week
- Antibody Numbering and Antigen Receptor ClassIfication☆237Updated last year
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆148Updated 4 months ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆164Updated last year
- Code for ColabDock paper☆148Updated 5 months ago
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…☆206Updated 5 months ago
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆165Updated 2 years ago
- AlphaFold2 non-docker setup☆367Updated last year
- A collection of *fold* tools☆300Updated 2 months ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆266Updated last year
- predicting peptide-protein interactions☆135Updated last year
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆120Updated 2 years ago
- Compressing protein structures effectively with torsion angles☆180Updated 2 months ago
- Repository for publicly available deep learning models developed in Rosetta community☆119Updated 4 years ago
- trRosetta for protein design☆183Updated 4 years ago
- Official repo of the modular BioExcel version of HADDOCK☆198Updated this week
- Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…☆171Updated 2 years ago
- ☆199Updated 6 months ago
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…☆300Updated 4 months ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆178Updated 3 months ago
- Rifdock Library for Conformational Search☆162Updated last year
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆114Updated last year
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆110Updated last year