Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
☆90Mar 22, 2024Updated 2 years ago
Alternatives and similar repositories for SpeedPPI
Users that are interested in SpeedPPI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Apr 13, 2026Updated 3 months ago
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆172Sep 8, 2024Updated last year
- Identifying peptide-receptor interactions using AlphaFold-Multimer☆28Sep 12, 2023Updated 2 years ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆119Feb 19, 2026Updated 5 months ago
- ☆317Jun 16, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆38Dec 21, 2023Updated 2 years ago
- Modelling of Large Protein Complexes☆39Aug 8, 2025Updated 11 months ago
- ☆15Jun 3, 2025Updated last year
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆189Oct 7, 2025Updated 9 months ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆31Aug 9, 2024Updated last year
- Code for ColabDock paper☆157May 1, 2025Updated last year
- Protein-ligand structure prediction☆240Jul 31, 2025Updated 11 months ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Jul 5, 2025Updated last year
- ☆47Sep 16, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆16Dec 10, 2024Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆133Aug 3, 2025Updated 11 months ago
- A series of scripts that facilitate the prediction of user-defined protein structural properties using AlphaFold2☆12Aug 28, 2023Updated 2 years ago
- Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.☆90Jun 18, 2021Updated 5 years ago
- ☆92Sep 25, 2024Updated last year
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆99Aug 29, 2023Updated 2 years ago
- ☆15Jun 19, 2026Updated last month
- ☆13Jul 11, 2023Updated 3 years ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆415Feb 26, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆46Jan 10, 2024Updated 2 years ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆101Jul 29, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- Bib'23: Improved the Heterodimer Protein Complex Prediction with Protein Language Models☆15Dec 21, 2023Updated 2 years ago
- Masif seed paper repository☆171Sep 22, 2025Updated 9 months ago
- MAGPIE☆17May 5, 2024Updated 2 years ago
- PLM-interact: extending protein language models to predict protein-protein interactions.☆71Aug 29, 2025Updated 10 months ago
- predicting peptide-protein interactions☆141Dec 23, 2023Updated 2 years ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆56Dec 9, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆18Mar 13, 2024Updated 2 years ago
- Weighted Ensemble Data Analysis and Plotting☆27Updated this week
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆33Jan 17, 2023Updated 3 years ago
- Protein prediction models implemented with Modal☆34Jul 9, 2026Updated last week
- In silico directed evolution of peptide binders with AlphaFold☆274Apr 24, 2026Updated 2 months ago
- A collections of scripts for working molecular dynamics simulations☆47Jun 1, 2026Updated last month
- ☆14Mar 16, 2024Updated 2 years ago