patrickbryant1 / SpeedPPILinks
Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
☆90Updated last year
Alternatives and similar repositories for SpeedPPI
Users that are interested in SpeedPPI are comparing it to the libraries listed below
Sorting:
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 8 months ago
- GTalign, high-performance protein structure alignment, superposition and search☆52Updated 4 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆65Updated 5 months ago
- ☆31Updated last year
- ☆54Updated 4 months ago
- A domain parser for Alphafold models☆45Updated 2 years ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆110Updated last month
- ColabFold protocol☆57Updated last year
- ☆46Updated last year
- Fast indexing and search of discontinuous motifs in protein structures☆108Updated 2 weeks ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆111Updated 4 months ago
- ☆37Updated 6 months ago
- Graph Network for protein-protein interface including language model features☆34Updated last year
- Detection of remote homology by comparison of protein language model representations☆59Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆43Updated 7 months ago
- Direct coupling analysis software for protein and RNA sequences☆53Updated 5 months ago
- ☆85Updated last month
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆108Updated 3 months ago
- Machine learning prediction of enzyme optimum pH☆48Updated 7 months ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- Tools for annotation, processing and ML for antibody sequences☆35Updated this week
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆76Updated 3 months ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated 2 years ago
- Learning the language of protein-protein interactions☆107Updated 3 months ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆67Updated last year
- Geometric deep learning of protein–DNA binding specificity☆76Updated 9 months ago
- Protein language model trained on coding DNA☆51Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆56Updated 3 years ago
- Fast protein structure searching or your money back☆118Updated 2 months ago