Alternatives and similar repositories for AlphaPulldown:

Users that are interested in AlphaPulldown are comparing it to the libraries listed below

• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆231Updated 3 months ago
• mat10d / EvolvePro
  This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…
  ☆229Updated 2 weeks ago
• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆490Updated last week
• oxpig / ANARCI
  Antibody Numbering and Antigen Receptor ClassIfication
  ☆209Updated 10 months ago
• nrbennet / dl_binder_design
  ☆300Updated 8 months ago
• kalininalab / alphafold_non_docker
  AlphaFold2 non-docker setup
  ☆357Updated last year
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆262Updated last month
• Zuricho / ParallelFold
  Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…
  ☆164Updated last year
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆197Updated last year
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆111Updated last year
• bjornwallner / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆268Updated 2 months ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆148Updated last year
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆355Updated 10 months ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆137Updated 5 months ago
• FreshAirTonight / af2complex
  Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
  ☆159Updated 7 months ago
• SysBioChalmers / DLKcat
  Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…
  ☆152Updated last year
• kuixu / alphafold
  Install alphafold on the local machine, get out of docker.
  ☆101Updated 3 years ago
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆310Updated 5 months ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆164Updated last week
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆133Updated 2 months ago
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆152Updated 10 months ago
• steineggerlab / foldcomp
  Compressing protein structures effectively with torsion angles
  ☆172Updated this week
• PDB-REDO / dssp
  Application to assign secondary structure to proteins
  ☆192Updated this week
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆124Updated 3 years ago
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆177Updated 6 months ago
• uw-ipd / RoseTTAFold2
  ☆190Updated 4 months ago
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆158Updated 2 years ago
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆353Updated last year
• OATML-Markslab / ProteinGym
  Official repository for the ProteinGym benchmarks
  ☆292Updated this week
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆76Updated last month