akds / CoevolveMLLinks
Deploying synthetic coevolution and machine learning to engineer protein-protein interactions
☆16Updated 2 years ago
Alternatives and similar repositories for CoevolveML
Users that are interested in CoevolveML are comparing it to the libraries listed below
Sorting:
- ☆12Updated 2 years ago
- ☆15Updated last year
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆54Updated last month
- A 3D-equivariant neural network for protein structure accuracy estimation☆20Updated 2 years ago
- ☆20Updated last year
- ☆28Updated 2 months ago
- Versatile human antibody sequence design☆21Updated 8 months ago
- Predicting mutational effects on protein binding from folding energy. ICML 2025.☆40Updated 5 months ago
- Structure-conditioned masked language modeling for protein sequence design☆70Updated last year
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Updated last year
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Updated last year
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Geometric Algebra Flow Matching (GAFL) for Protein Backbone Generation☆17Updated 2 months ago
- Code for holographic machine learning of proteins☆24Updated last year
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Updated 2 years ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆35Updated last month
- Code for RL-DIF☆16Updated 7 months ago
- Code for the paper "Learning to engineer protein flexibility".☆22Updated last week
- This repository implements Gibbs sampling with Graph-based Smoothing☆41Updated last year
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Updated 2 years ago
- ☆35Updated 7 months ago
- ☆35Updated last month
- ☆15Updated 6 months ago
- Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"☆24Updated 4 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆65Updated 8 months ago
- Adapting protein language models for structure-conditioned design☆40Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆35Updated last year
- [NeurIPS 2025 spotlight] Efficient factorized variant of the IPA module.☆41Updated 2 months ago
- Homomer symmetry prediction from protein sequence☆41Updated 10 months ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆58Updated last year