Deploying synthetic coevolution and machine learning to engineer protein-protein interactions
☆16Jul 30, 2023Updated 2 years ago
Alternatives and similar repositories for CoevolveML
Users that are interested in CoevolveML are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools to build coarse grained models and perform simulations with OpenMM☆24Dec 16, 2022Updated 3 years ago
- Deep transformer for predicting interchain residue-residue distances of protein complexes☆14Mar 19, 2024Updated 2 years ago
- test☆14Nov 13, 2020Updated 5 years ago
- ☆18Jun 27, 2025Updated 10 months ago
- Implementation of methods to sample from Boltzmann distributions☆22Jan 24, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Flexibility-conditioned protein structure design☆33Mar 10, 2026Updated last month
- Potts model-based protein sequence design☆97Apr 16, 2026Updated 2 weeks ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆63Jun 17, 2024Updated last year
- ☆37Jun 17, 2025Updated 10 months ago
- ASAP-SML: An Antibody Sequence Analysis Pipeline Using Statistical Testing and Machine Learning☆11Jul 6, 2023Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- Decoding the functional networks of non-model organisms☆12Mar 11, 2026Updated last month
- Protein representation and design under a single training scheme☆24Updated this week
- ☆12Nov 16, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- [NeurIPS 2025] PRING: Rethinking Protein-Protein Interaction Prediciton from Pairs to Graphs☆20Oct 1, 2025Updated 7 months ago
- ☆17Jan 5, 2024Updated 2 years ago
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated last year
- A python tool for numerically encoding protein sequences based on PSSM profile☆13Jun 25, 2021Updated 4 years ago
- Free Parametrization for Small Molecules☆53Feb 18, 2026Updated 2 months ago
- Bib'23: Improved the Heterodimer Protein Complex Prediction with Protein Language Models☆15Dec 21, 2023Updated 2 years ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆113Feb 19, 2026Updated 2 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Apr 13, 2026Updated 2 weeks ago
- ☆14Jul 5, 2022Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆86Feb 11, 2026Updated 2 months ago
- AlphaLink: Integrating crosslinking MS data into OpenFold☆74Dec 14, 2023Updated 2 years ago
- Homomer symmetry prediction from protein sequence☆44Mar 13, 2025Updated last year
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago
- BioLiP2 database curation and web interface☆32Jun 19, 2025Updated 10 months ago
- ☆15Oct 9, 2025Updated 6 months ago
- ☆22Dec 20, 2024Updated last year
- Public Release of ProGen3 family of Models☆107Jul 21, 2025Updated 9 months ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆65Apr 3, 2026Updated 3 weeks ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆84Apr 21, 2026Updated last week
- A language model suite for numbering antigen receptor sequences.☆44Updated this week
- RNAGym is an extensive benchmark suite and resource for RNA fitness and structure prediction☆37Feb 25, 2026Updated 2 months ago
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- Practically and asymptotically accurate conditional sampling from diffusion generative models without conditional training☆47Nov 24, 2024Updated last year
- Generates and scores synthetically tractable elaborations from fragment screens☆21Apr 9, 2026Updated 3 weeks ago