Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
☆73Apr 13, 2026Updated 6 months ago
Alternatives and similar repositories for AFProfile
Users that are interested in AFProfile are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆121Dec 7, 2022Updated 3 years ago
- ☆95Sep 25, 2024Updated 2 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Mar 22, 2024Updated 2 years ago
- Structure prediction of alternative protein conformations☆86Feb 24, 2025Updated last year
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆194Oct 7, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Structure-conditioned masked language modeling for protein sequence design☆75Jan 31, 2024Updated 2 years ago
- Open source code for AlphaFold.☆39May 6, 2026Updated 5 months ago
- Protein-ligand structure prediction☆242Jul 31, 2025Updated last year
- Code for ColabDock paper☆158May 1, 2025Updated last year
- Diffusion-based all-atom protein generative model.☆239Aug 27, 2025Updated last year
- Building more accurate protein structures from backbone torsion angles☆16Mar 21, 2025Updated last year
- ☆13Jun 7, 2025Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆102Jul 29, 2024Updated 2 years ago
- AlphaLink: Integrating crosslinking MS data into OpenFold☆77Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Towards a protein binder candidate for every protein☆43Sep 1, 2026Updated last month
- ☆11Mar 27, 2026Updated 7 months ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 3 years ago
- A collection of *fold* tools☆303Aug 8, 2025Updated last year
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆548Mar 22, 2026Updated 7 months ago
- ☆36Mar 2, 2026Updated 7 months ago
- Voronota is a software tool for analyzing three-dimensional structures of biological macromolecules using the Voronoi diagram of atomic b…☆41Sep 4, 2026Updated last month
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆33Jan 17, 2023Updated 3 years ago
- ☆47Sep 16, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Structure prediction and design of proteins with noncanonical amino acids☆149Feb 1, 2026Updated 8 months ago
- ☆17Jun 3, 2025Updated last year
- ☆191Jul 24, 2026Updated 3 months ago
- Deep transformer for predicting interchain residue-residue distances of protein complexes☆14Mar 19, 2024Updated 2 years ago
- Fast protein backbone generation with SE(3) flow matching.☆329Jul 19, 2024Updated 2 years ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆90Jul 2, 2025Updated last year
- [NeurIPS 2024] MSA generative pretraining for advancing protein structure prediction☆34Mar 18, 2025Updated last year
- ☆214Apr 21, 2025Updated last year
- Fast and accurate protein structure prediction☆58Jan 17, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- In silico directed evolution of peptide binders with AlphaFold☆282Sep 25, 2026Updated last month
- ☆103Jul 24, 2026Updated 3 months ago
- ☆145Jun 3, 2025Updated last year
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆337Oct 6, 2025Updated last year
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆182Jun 25, 2026Updated 4 months ago
- Differentiable Pairing using Soft Scores☆11May 20, 2024Updated 2 years ago