Alternatives and similar repositories for biobox

Users that are interested in biobox are comparing it to the libraries listed below

• kamerlinlab / KIN
  Repo for the publication titled: "Key Interaction Networks: Identifying Evolutionarily Conserved Non-Covalent Interaction Networks Across…
  ☆17Updated last year
• mmtsb / toolset
  MMTSB Tool Set
  ☆31Updated last month
• tiwarylab / State-Predictive-Information-Bottleneck
  ☆26Updated 2 years ago
• mirabdi / PDAnalysis
  ☆32Updated last year
• bussilab / MDRefine
  ☆16Updated last month
• CSB-KaracaLab / prot-on
  This repo contains the collection of codes to find designer interfacial mutations
  ☆17Updated last year
• julie-forman-kay-lab / IDPConformerGenerator
  Build conformational representations of Intrinsically Disordered Proteins and Regions by a guided sampling of the protein torsion space
  ☆23Updated 3 months ago
• drewnutt / open_combind
  Open-source docking pipeline leveraging pairwise statistics
  ☆12Updated 11 months ago
• PatWalters / fragment_expansion
  Software tools for fragment-based drug discovery (FBDD)
  ☆27Updated 5 years ago
• CCPBioSim / CCP5_Simulation_of_BioMolecules
  ☆14Updated 11 months ago
• YoshidomeGroup-Hydration / gr-predictor
  ☆15Updated 2 months ago
• biotite-dev / molmarbles
  A bridge between Biotite and OpenMM
  ☆15Updated 3 months ago
• SENSAAS / sensaas
  Shape-based alignment of molecules using 3D point-based representation
  ☆21Updated last year
• DLab / RIP-MD
  ☆15Updated 7 years ago
• openmm / openmm-cookbook
  The OpenMM Cookbook and Tutorials
  ☆44Updated last year
• ELELAB / pyinteraph2
  development repository for PyInteraph2
  ☆22Updated 3 months ago
• delemottelab / allosteric-pathways
  Building and analyzing residue interaction networks with cofactors (includes tutorial).
  ☆17Updated 4 years ago
• ChenGiuseppe / PyMM
  A Python program for QM/MM Simulations based on the Perturbed Matrix Method
  ☆25Updated last year
• cbouy / ProLIF
  Protein-Ligand Interaction Fingerprints
  ☆20Updated 4 years ago
• agrybauskas / rotag
  A collection of tools that generate and analyse side-chain rotamer libraries
  ☆10Updated last week
• jscant / PointVS
  SE(3)-equivariant point cloud networks for virtual screening
  ☆20Updated 2 years ago
• greener-group / GB99dms
  The GB99dms implicit solvent force field for proteins, plus scripts and data
  ☆23Updated 3 weeks ago
• pstansfeld / MemProtMD
  ☆42Updated last month
• shirtsgroup / cg_openmm
  Tools to build coarse grained models and perform simulations with OpenMM
  ☆24Updated 2 years ago
• choderalab / neutromeratio
  Tautomer ratios in solution
  ☆25Updated 3 years ago
• quantaosun / FEP-Minus
  Academic license pre-required. While FEP Plus charge you 100,000 USD per year. Here comes the FEP-Minus, it is a Schrodinger FEP Plus ide…
  ☆21Updated 10 months ago
• npschafer / openawsem
  An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM
  ☆36Updated 3 weeks ago
• shunsakuraba / fepsuite
  Software package for FEP
  ☆18Updated 11 months ago
• ljmartin / dockviz
  docking visualization with py3dmol and streamlit
  ☆23Updated 4 years ago
• smu-tao-group / LAST
  LAST: Latent Space Assisted Adaptive Sampling for Protein Trajectories
  ☆12Updated 2 years ago