Alternatives and similar repositories for biobox

Users that are interested in biobox are comparing it to the libraries listed below

• CSB-KaracaLab / prot-on
  This repo contains the collection of codes to find designer interfacial mutations
  ☆17Updated 2 years ago
• RUBi-ZA / MODE-TASK
  PCA and normal mode analysis of proteins
  ☆20Updated last year
• YoshidomeGroup-Hydration / gr-predictor
  ☆15Updated 4 months ago
• moldyn / Clustering
  Robust and stable clustering of molecular dynamics simulation trajectories.
  ☆19Updated 3 years ago
• jscant / PointVS
  SE(3)-equivariant point cloud networks for virtual screening
  ☆24Updated 2 years ago
• DLab / RIP-MD
  ☆15Updated 7 years ago
• kamerlinlab / KIN
  Repo for the publication titled: "Key Interaction Networks: Identifying Evolutionarily Conserved Non-Covalent Interaction Networks Across…
  ☆18Updated 2 years ago
• julie-forman-kay-lab / IDPConformerGenerator
  Build conformational representations of Intrinsically Disordered Proteins and Regions by a guided sampling of the protein torsion space
  ☆29Updated last month
• ldomic / lintools
  Python script that creates 2D protein-ligand interaction images
  ☆14Updated 7 years ago
• CCPBioSim / CCP5_Simulation_of_BioMolecules
  ☆17Updated 5 months ago
• Bitbol-Lab / DiffPALM
  Differentiable Pairing using Alignment-based Language Models
  ☆24Updated 2 years ago
• CompBiochBiophLab / sbm-openmm
  Python library to run structure based model (SBM) simulations using the OpenMM toolkit
  ☆23Updated last week
• cbouy / ProLIF
  Protein-Ligand Interaction Fingerprints
  ☆21Updated 5 years ago
• ChenGiuseppe / PyMM
  A Python program for QM/MM Simulations based on the Perturbed Matrix Method
  ☆26Updated 2 years ago
• Dankem / pyGROMODS
  Python based Graphical User Interface for generating input files for and running molecular dynamic simulation.
  ☆10Updated last year
• ELELAB / pyinteraph2
  development repository for PyInteraph2
  ☆22Updated 9 months ago
• shirtsgroup / cg_openmm
  Tools to build coarse grained models and perform simulations with OpenMM
  ☆25Updated 3 years ago
• ur-whitelab / wazy
  Bayesian Optimization with Pretrained Protein Sequence Models
  ☆56Updated last year
• npschafer / openawsem
  An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM
  ☆38Updated 7 months ago
• dkoes / GNINA-1.0
  Paper for release
  ☆11Updated 4 years ago
• programmablebio / saltnpeppr
  An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders
  ☆16Updated last year
• agrybauskas / rotag
  A collection of tools that generate and analyse side-chain rotamer libraries
  ☆10Updated this week
• MoaazK / deepallo
  A Deep Learning Framework for Allosteric Site Prediction
  ☆15Updated 8 months ago
• LBLQMM / MACAW
  ☆14Updated 3 years ago
• tiwarylab / State-Predictive-Information-Bottleneck
  ☆29Updated 2 years ago
• yuxuanzhuang / ggmolvis
  Molecular visualization for MDAnalysis with MolecularNodes in Blender
  ☆17Updated 9 months ago
• smog-server / OpenSMOG
  OpenSMOG is a Python library for performing molecular dynamics simulations using Structure-Based Models. OpenSMOG uses OpenMM.
  ☆12Updated 2 weeks ago
• sokrypton / tf_proteins
  some tools for working with protein (PDB) files in tensorflow
  ☆11Updated 6 years ago
• ur-whitelab / peptide-dashboard
  Web cards/apps describing peptides
  ☆30Updated 2 years ago
• LPDI-EPFL / FunFolDesData
  Rosetta FunFolDes – a general framework for the computational design of functional proteins.
  ☆21Updated 6 years ago