Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"
☆17Dec 8, 2024Updated last year
Alternatives and similar repositories for AFM-IDR
Users that are interested in AFM-IDR are comparing it to the libraries listed below
Sorting:
- ☆18Aug 28, 2023Updated 2 years ago
- Modelling protein conformational landscape with Alphafold☆56Aug 29, 2025Updated 6 months ago
- ☆54Dec 10, 2025Updated 2 months ago
- STARLING - conSTruction of intrinsicAlly disoRdered proteins ensembles efficientLy vIa multi-dimeNsional Generative models☆44Dec 23, 2025Updated 2 months ago
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆21Oct 31, 2025Updated 4 months ago
- Protein representation and design under a single training scheme☆24Updated this week
- ☆11May 3, 2025Updated 10 months ago
- Explicit crosslinks in AlphaFold 3☆23Mar 17, 2025Updated 11 months ago
- Files and utilities for protein-emoji☆27Nov 4, 2022Updated 3 years ago
- ☆27Feb 10, 2024Updated 2 years ago
- A Deep Learning Framework for Allosteric Site Prediction☆15May 21, 2025Updated 9 months ago
- code and source data for de novo design of Kemp elimination paper☆24Sep 18, 2025Updated 5 months ago
- Visualize structure data from Biotite with PyMOL☆26Mar 16, 2025Updated 11 months ago
- NeuralMD for Protein-ligand Binding Simulation, Nature Communicaitons 2025 https://www.nature.com/articles/s41467-025-67808-z☆40Nov 4, 2025Updated 4 months ago
- Code for the paper "OneProt: Towards Multi-Modal Protein Foundation Models"☆22Oct 31, 2025Updated 4 months ago
- Contrastive learning and pre-trained encoder (CLAPE) for protein-small molecules binding (SMB) sites prediction☆19Aug 22, 2024Updated last year
- Drug-Likeness☆16Dec 11, 2022Updated 3 years ago
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated last week
- code for SeqDance/ESMDance, biophysics-informed protein language models☆55Jan 28, 2026Updated last month
- [ICML 2024] Floating Anchor Diffusion Model for Multi-motif Scaffolding☆31Aug 23, 2024Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆120Aug 3, 2025Updated 7 months ago
- ☆70Feb 13, 2026Updated 3 weeks ago
- Epitope Prediction Pipeline and analysis tools built around AlphaFold 2☆20May 9, 2024Updated last year
- A Nextflow pipeline that creates reliable, structure-informed MSAs of thousands of protein sequences which can supplement structural info…☆11Nov 19, 2025Updated 3 months ago
- ☆19Feb 3, 2026Updated last month
- Synthetic Accessibility via Fragment Assembly Generation☆19Feb 1, 2026Updated last month
- ☆66Apr 8, 2025Updated 10 months ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆61Jan 30, 2026Updated last month
- Code for ApoDock☆21Apr 7, 2025Updated 11 months ago
- A conditionally adapted protein language model for the generation of enzymes☆23Nov 26, 2024Updated last year
- P2DFlow: A Protein Ensemble Generative Model with SE(3) Flow Matching☆44May 22, 2025Updated 9 months ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆56Apr 10, 2025Updated 10 months ago
- Toolkit for alphafold3 input and output files☆97Mar 1, 2026Updated last week
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆207Jan 3, 2026Updated 2 months ago
- MCGLPPI and MCGLPPI++: Integration of molecular coarse-grained model into geometric representation learning framework for protein-protein…☆25Jan 8, 2025Updated last year
- ☆10Oct 31, 2025Updated 4 months ago
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆10Jan 7, 2026Updated 2 months ago
- Disordered protein ensemble prediction☆12Feb 19, 2026Updated 2 weeks ago
- DockCADD An automated computational framework for molecular docking☆15Mar 9, 2025Updated 11 months ago