ChenPy00 / PPB-AffinityLinks
Baseline model for PPB-Affinity benchmark data
☆33Updated 6 months ago
Alternatives and similar repositories for PPB-Affinity
Users that are interested in PPB-Affinity are comparing it to the libraries listed below
Sorting:
- workflow used to prepare PPB-Affinity database☆28Updated last year
- Modelling protein conformational landscape with Alphafold☆54Updated 3 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆34Updated last year
- code for SeqDance/ESMDance, biophysics-informed protein language models☆41Updated 8 months ago
- ☆61Updated last year
- ☆46Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated 2 years ago
- Graphormer Based Protein Sequence Design☆25Updated last year
- ☆52Updated last week
- ☆37Updated 2 years ago
- Extension of ThermoMPNN for double mutant predictions☆49Updated last month
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆44Updated this week
- ☆29Updated 2 months ago
- A benchmark for 3D biomolecular structure prediction models☆67Updated 6 months ago
- ☆25Updated 6 months ago
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆25Updated 3 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆57Updated 6 months ago
- Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction☆84Updated 2 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆78Updated 3 months ago
- ☆34Updated last year
- Code for humanization of antibody and nanobody☆65Updated 3 months ago
- ☆39Updated last year
- ESMDynamic repo☆22Updated 2 weeks ago
- Boltzina: Efficient and Accurate Virtual Screening via Docking-Guided Binding Prediction with Boltz-2☆70Updated last week
- ☆30Updated 10 months ago
- ☆71Updated 8 months ago
- Calculate the RMSD between two antibody structure (including nanobody and antibody).☆11Updated 2 years ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆50Updated last week
- Evaluating Protein Binding Interfaces with Transformer Networks☆46Updated 2 years ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago