Alternatives and similar repositories for PPB-Affinity

Users that are interested in PPB-Affinity are comparing it to the libraries listed below

• Huatsing-Lau / PPB-Affinity-DataPrepWorkflow
  workflow used to prepare PPB-Affinity database
  ☆26Updated 11 months ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆32Updated last year
• liuyf020419 / SCUBA-D
  ☆60Updated last year
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated 9 months ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆39Updated 4 months ago
• bene837 / af2seq
  ☆44Updated 10 months ago
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆63Updated 2 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆38Updated 10 months ago
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated 5 months ago
• skalyaanamoorthy / PSLMs
  ☆19Updated 9 months ago
• decodermu / GPD
  Graphormer Based Protein Sequence Design
  ☆25Updated last year
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆51Updated last week
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆49Updated 8 months ago
• Bitbol-Lab / rag-esm
  RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences
  ☆16Updated last month
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated 2 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆41Updated last week
• stebliankin / piston
  Evaluating Protein Binding Interfaces with Transformer Networks
  ☆47Updated last year
• Gonglab-THU / GDFold2
  ☆15Updated 7 months ago
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆63Updated 2 months ago
• ohuelab / ColabDesign-cyclic-binder
  ☆33Updated last year
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆22Updated last year
• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆45Updated 6 months ago
• PKUliujl / GeoSeqBuilder
  ☆28Updated 6 months ago
• HannesStark / CodonMPNN
  ☆28Updated 7 months ago
• anirudhvenk / antibody-dpo
  ☆23Updated 2 months ago
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆65Updated last year
• KhondamirRustamov / FoldCraft
  ☆36Updated this week
• JoreyYan / Originflow
  ☆16Updated 2 months ago
• danny305 / StabilityOracle
  ☆27Updated last year
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆42Updated 8 months ago