Alternatives and similar repositories for PPB-Affinity

Users that are interested in PPB-Affinity are comparing it to the libraries listed below

• Huatsing-Lau / PPB-Affinity-DataPrepWorkflow
  workflow used to prepare PPB-Affinity database
  ☆22Updated 10 months ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆31Updated last year
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated 8 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆36Updated 2 weeks ago
• liuyf020419 / SCUBA-D
  ☆60Updated last year
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆51Updated 3 weeks ago
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆59Updated 2 months ago
• decodermu / GPD
  Graphormer Based Protein Sequence Design
  ☆24Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated last month
• Bitbol-Lab / rag-esm
  RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences
  ☆16Updated 3 weeks ago
• bene837 / af2seq
  ☆43Updated 10 months ago
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆33Updated 8 months ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆38Updated 3 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆38Updated 9 months ago
• wangxr0526 / EasIFA
  Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”
  ☆37Updated 4 months ago
• danny305 / StabilityOracle
  ☆26Updated last year
• sokrypton / af2bind
  ☆50Updated 3 weeks ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆44Updated 7 months ago
• anirudhvenk / antibody-dpo
  ☆22Updated last month
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated 4 months ago
• HannesStark / CodonMPNN
  ☆27Updated 7 months ago
• WeiLab-Biology / DeepProSite
  ☆33Updated last year
• CDDLeiden / PCMol
  Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.
  ☆65Updated 3 months ago
• bwicky / oligomer_hallucination
  ☆36Updated last year
• ikalvet / invrotzyme
  Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.
  ☆21Updated 4 months ago
• luwei0917 / AlphaFold3_PPI
  ☆15Updated last year
• PKUliujl / GeoSeqBuilder
  ☆28Updated 5 months ago
• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆45Updated 6 months ago
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆64Updated last year
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆43Updated 7 months ago