Baseline model for PPB-Affinity benchmark data
☆42May 21, 2025Updated last year
Alternatives and similar repositories for PPB-Affinity
Users that are interested in PPB-Affinity are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- workflow used to prepare PPB-Affinity database☆32Aug 22, 2024Updated last year
- Code for the paper "OneProt: Towards Multi-Modal Protein Foundation Models"☆23Oct 31, 2025Updated 8 months ago
- Pretrainable geometric graph neural network for antibody affinity maturation☆79Mar 18, 2025Updated last year
- No description yet.☆17Aug 8, 2024Updated last year
- ☆28May 26, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Metrics for our protein design competitions.☆36Nov 1, 2024Updated last year
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆267Jul 24, 2025Updated 11 months ago
- ☆11Mar 28, 2024Updated 2 years ago
- ☆18Dec 23, 2024Updated last year
- ☆13May 24, 2026Updated last month
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated last year
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆85Sep 11, 2025Updated 9 months ago
- Benchmark for Biophysical Sequence Optimization Algorithms☆23Apr 15, 2026Updated 2 months ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A benchmark for 3D biomolecular structure prediction models☆69May 11, 2025Updated last year
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆41Sep 27, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- P2DFlow: A Protein Ensemble Generative Model with SE(3) Flow Matching☆43May 22, 2025Updated last year
- ☆113Jun 5, 2026Updated 3 weeks ago
- Epitope Prediction Pipeline and analysis tools built around AlphaFold 2☆20May 9, 2024Updated 2 years ago
- Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning☆24Mar 19, 2025Updated last year
- NeuralMD for Protein-ligand Binding Simulation, Nature Communicaitons 2025 https://www.nature.com/articles/s41467-025-67808-z☆49Nov 4, 2025Updated 7 months ago
- ☆15Mar 28, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Collection of papers for Molecular Representation using AI☆38Feb 21, 2026Updated 4 months ago
- ☆64May 13, 2026Updated last month
- Modelling protein conformational landscape with Alphafold☆60Aug 29, 2025Updated 10 months ago
- ☆83Mar 23, 2026Updated 3 months ago
- Local Interaction Score (LIS) for structure prediction analysis☆80Jun 17, 2026Updated last week
- Learning the language of protein-protein interactions☆150Jun 15, 2026Updated 2 weeks ago
- Official Implementation of CompassDock☆21Feb 13, 2026Updated 4 months ago
- A convinent tool to visualize AlphaFold 3 prediction results with PyMOL and matplotlib☆19May 20, 2024Updated 2 years ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆127Oct 24, 2025Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A python implementation of pdb2oniom for QM/MM (ONIOM) calculations☆12Oct 2, 2025Updated 8 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆132Nov 19, 2025Updated 7 months ago
- Code repository for the SPOC tool for scoring binary AF-M predicitons.☆15Apr 27, 2025Updated last year
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆62Jun 17, 2024Updated 2 years ago
- NeurIPS 2024 Dataset and Benchmark Submission "AsEP: Benchmarking Deep Learning Methods for Antibody-specific Epitope Prediction"☆35Aug 12, 2024Updated last year
- Virus Protein Structural Analysis Toolkit☆14Sep 9, 2024Updated last year
- Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"☆53Mar 3, 2025Updated last year