Alternatives and similar repositories for EBMDock

Users that are interested in EBMDock are comparing it to the libraries listed below

• dqwang122 / EATLM
  Code for 'On Pre-trained Language Models For Antibody'
  ☆32Updated 2 years ago
• zaixizhang / FAIR
  NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement
  ☆47Updated 2 years ago
• Vincentx15 / atom2D
  ☆12Updated 11 months ago
• Immortals-33 / Scaffold-Lab
  A comprehensive benchmark on the performances of multiple protein backbone generative models.
  ☆64Updated 5 months ago
• ujk21 / dyn-informed
  ☆12Updated last year
• VITA-Group / HotProtein
  [ICLR 2023] "HotProtein: A Novel Framework for Protein Thermostability Prediction and Editing" by Tianlong Chen*, Chengyue Gong*, Daniel …
  ☆31Updated 2 years ago
• chao1224 / ProteinDT
  A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)
  ☆95Updated 9 months ago
• bowen-gao / ProFSA
  [ICLR 2024] ProFSA: Self-supervised Pocket Pretraining via Protein Fragment-Surroundings Alignment
  ☆14Updated last year
• BioinfoMachineLearning / EnQA
  A 3D-equivariant neural network for protein structure accuracy estimation
  ☆20Updated 2 years ago
• instadeepai / protein-structure-tokenizer
  Official implementation of "Learning the language of protein structures"
  ☆39Updated 4 months ago
• tsynbio / TourSynbio
  ☆19Updated last year
• DeepGraphLearning / SiamDiff
  Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)
  ☆42Updated 2 years ago
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆58Updated last year
• LDeng0205 / confidence-bootstrapping
  Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.
  ☆27Updated last year
• leojklarner / context-guided-diffusion
  Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design
  ☆39Updated last year
• DeepGraphLearning / DiffPack
  Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing
  ☆89Updated last year
• ml-jku / vnegnn
  ☆39Updated 2 weeks ago
• LirongWu / Prompt-DDG
  Code for ICML 2024 paper "Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical P…
  ☆43Updated last year
• elttaes / Revisiting-PLMs
  Exploring Evolution-aware & free protein language models as protein function predictors
  ☆63Updated last year
• shichence / ProtSeed
  Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"
  ☆24Updated 2 years ago
• masa-ue / ProDifEvo-Refinement
  Evolutionary Algorithm with Diffusion Models for Protein Design
  ☆28Updated 8 months ago
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆69Updated last year
• hits-mli / gafl
  Geometric Algebra Flow Matching (GAFL) for Protein Backbone Generation
  ☆14Updated this week
• NVlabs / protcomposer
  ☆48Updated 3 months ago
• KoubaPetr / Flexpert
  Code for the paper "Learning to engineer protein flexibility".
  ☆22Updated last month
• lujiarui / esmdiff
  Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)
  ☆66Updated 8 months ago
• liugangcode / InfoAlign
  The code for "Learning Molecular Representation in a Cell"
  ☆37Updated 7 months ago
• aqlaboratory / insilico_design_pipeline
  In-silico design pipeline for evaluating protein structure diffusion models.
  ☆27Updated last year
• rish-16 / rna-backbone-design
  Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design
  ☆80Updated 2 weeks ago
• guanjq / confopt_official
  The official implementation of Energy-Inspired Molecular Conformation Optimization (ICLR 2022)
  ☆36Updated 3 years ago