kiharalab / Distance-AF
Public version for Distance-AF
☆18Updated 9 months ago
Alternatives and similar repositories for Distance-AF:
Users that are interested in Distance-AF are comparing it to the libraries listed below
- Implementation of Protein Invariant Point Packer (PIPPack)☆31Updated 7 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆39Updated last month
- Augmenting zero-shot mutant prediction by retrieval-based logits fusion.☆32Updated last week
- ☆32Updated 4 months ago
- Efficient implementatin of ESM family.☆45Updated 3 weeks ago
- Structure-conditioned masked language modeling for protein sequence design☆61Updated 11 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆30Updated 2 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆22Updated last month
- Adapting protein language models for structure-conditioned design☆34Updated 5 months ago
- code for SeqDance, a biophysics-informed protein language model☆20Updated 2 months ago
- ☆36Updated last year
- ☆33Updated this week
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆35Updated last month
- A benchmark for 3D biomolecular structure prediction models☆52Updated last month
- ☆25Updated 2 years ago
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆31Updated last year
- This repository implements Gibbs sampling with Graph-based Smoothing☆36Updated 7 months ago
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆29Updated last week
- Generative diverse protein backbones by protein language model☆29Updated last month
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆54Updated 8 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆31Updated last month
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆54Updated last year
- ☆60Updated last month
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆53Updated this week
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆16Updated last month
- ☆77Updated 3 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆45Updated this week
- ☆24Updated last month