Public version for Distance-AF
☆30Aug 17, 2025Updated 6 months ago
Alternatives and similar repositories for Distance-AF
Users that are interested in Distance-AF are comparing it to the libraries listed below
Sorting:
- Flexibility-conditioned protein structure design☆32Jul 5, 2025Updated 7 months ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆170Dec 24, 2023Updated 2 years ago
- Histidine Protonation State Optimizer for setting up MD simulations based on semi-empirical QM resonance☆20Jan 26, 2026Updated last month
- ☆37Dec 21, 2023Updated 2 years ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆175Oct 7, 2025Updated 4 months ago
- CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.☆32Oct 14, 2024Updated last year
- ☆91Sep 25, 2024Updated last year
- Toolkit for alphafold3 input and output files☆97Updated this week
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆39Sep 27, 2024Updated last year
- ☆54Dec 10, 2025Updated 2 months ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆43May 15, 2024Updated last year
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆10Jan 7, 2026Updated last month
- Explicit crosslinks in AlphaFold 3☆23Mar 17, 2025Updated 11 months ago
- ☆20May 7, 2024Updated last year
- Deep learning tools for peptide substrate prediction and generation☆38Nov 20, 2025Updated 3 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Aug 26, 2024Updated last year
- ☆46Nov 19, 2025Updated 3 months ago
- PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion☆13Jul 4, 2024Updated last year
- Deep learning + physical modeling for 3D protein metal ion binding prediction☆13Feb 24, 2025Updated last year
- Colorblind-friendly, perceptually uniform palettes for chimerax☆14Sep 26, 2020Updated 5 years ago
- GitHub for AI4PD 2023 Workshop in Chile☆12Oct 12, 2023Updated 2 years ago
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- BioLiP2 database curation and web interface☆29Jun 19, 2025Updated 8 months ago
- AlphaLink: Integrating crosslinking MS data into OpenFold☆73Dec 14, 2023Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆71Jan 31, 2024Updated 2 years ago
- ☆25Apr 26, 2023Updated 2 years ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆170Feb 6, 2026Updated 3 weeks ago
- ELViM is a method for visualizing the energy landscapes of biomolecules simulations.☆12Aug 18, 2025Updated 6 months ago
- ☆40Jul 28, 2025Updated 7 months ago
- Kuhlman Lab Installation of AlphaFold3☆39Sep 30, 2025Updated 5 months ago
- AlphaFast: ultra-high-throughput AlphaFold3 inference with MMSeqs2-GPU☆84Updated this week
- The programs for preprocessing cryo-EM density maps for machine learning☆32Oct 1, 2024Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆135Nov 11, 2025Updated 3 months ago
- ☆16Oct 3, 2023Updated 2 years ago
- Efficient manipulation of protein structures in Python☆63Sep 27, 2025Updated 5 months ago
- cryoID identifies the protein(s) in unknown near-atomic resolution cryoEM density maps from a pool of candidate proteins.☆13Dec 1, 2019Updated 6 years ago
- ☆13Jul 11, 2023Updated 2 years ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆58Jan 22, 2024Updated 2 years ago
- ☆39Apr 30, 2024Updated last year