Public version for Distance-AF
☆31Aug 17, 2025Updated 7 months ago
Alternatives and similar repositories for Distance-AF
Users that are interested in Distance-AF are comparing it to the libraries listed below
Sorting:
- CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.☆32Oct 14, 2024Updated last year
- Flexibility-conditioned protein structure design☆32Mar 10, 2026Updated last week
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆171Dec 24, 2023Updated 2 years ago
- ☆37Dec 21, 2023Updated 2 years ago
- Deep learning tools for peptide substrate prediction and generation☆41Nov 20, 2025Updated 4 months ago
- BioLiP2 database curation and web interface☆30Jun 19, 2025Updated 9 months ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆177Oct 7, 2025Updated 5 months ago
- DiffModeler: a diffusion model based protein complex structure modeling tool.☆58Jan 12, 2026Updated 2 months ago
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- Histidine Protonation State Optimizer for setting up MD simulations based on semi-empirical QM resonance☆20Mar 6, 2026Updated 2 weeks ago
- ☆49Nov 19, 2025Updated 4 months ago
- DeepMainmast☆15Aug 12, 2024Updated last year
- Toolkit for alphafold3 input and output files☆97Mar 1, 2026Updated 2 weeks ago
- Kuhlman Lab Installation of AlphaFold3☆40Sep 30, 2025Updated 5 months ago
- Explicit crosslinks in AlphaFold 3☆23Mar 17, 2025Updated last year
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆40Sep 27, 2024Updated last year
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆43May 15, 2024Updated last year
- ☆92Sep 25, 2024Updated last year
- A standardized protein design benchmark for motif-scaffolding problems☆76Jan 27, 2026Updated last month
- AlphaLink: Integrating crosslinking MS data into OpenFold☆74Dec 14, 2023Updated 2 years ago
- ☆20May 7, 2024Updated last year
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆10Jan 7, 2026Updated 2 months ago
- Humanness of de-novo designed proteins☆41May 19, 2025Updated 10 months ago
- HiCFoundation is a generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species.☆26Aug 23, 2025Updated 6 months ago
- cryoID identifies the protein(s) in unknown near-atomic resolution cryoEM density maps from a pool of candidate proteins.☆13Dec 1, 2019Updated 6 years ago
- Structure-conditioned masked language modeling for protein sequence design☆72Jan 31, 2024Updated 2 years ago
- A deep manifold learning framework for 4D cryo-EM data processing for simultaneous determination of high-resolution structures and dynami…☆18Sep 12, 2022Updated 3 years ago
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆326Oct 6, 2025Updated 5 months ago
- ☆13Jul 11, 2023Updated 2 years ago
- ☆25Apr 26, 2023Updated 2 years ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆137Nov 11, 2025Updated 4 months ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆172Feb 6, 2026Updated last month
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆156Oct 11, 2023Updated 2 years ago
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆16Feb 13, 2026Updated last month
- AlphaFast: ultra-high-throughput AlphaFold3 inference with MMSeqs2-GPU☆106Updated this week
- A web app to convert a PyMOL PSE file or PDB file to a easy to implement NGL.js view that can be implemented easily on any site☆28Jan 31, 2023Updated 3 years ago
- ELViM is a method for visualizing the energy landscapes of biomolecules simulations.☆12Aug 18, 2025Updated 7 months ago
- ☆55Mar 12, 2026Updated last week
- ☆41Jul 28, 2025Updated 7 months ago