Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix
☆39Jul 28, 2022Updated 4 years ago
Alternatives and similar repositories for pae_to_domains
Users that are interested in pae_to_domains are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A domain parser for Alphafold models☆50Dec 12, 2023Updated 2 years ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- Converts AlphaFold distograms into distance matrices and saves them into a number of formats☆16Dec 13, 2022Updated 3 years ago
- A lightweight library for loading and manipulating biomolecular structures☆25Aug 8, 2026Updated 3 months ago
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆28Aug 9, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A high performance drop-in replacement for Biotite's PDBFile.☆43Jun 21, 2026Updated 4 months ago
- Tutorial files☆12Aug 7, 2024Updated 2 years ago
- Visualize structure data from Biotite with PyMOL☆26Mar 16, 2025Updated last year
- scripts to visualise results of alphafold2 and 3 multimer runs☆19May 28, 2024Updated 2 years ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- ☆327Updated this week
- HInt (Homologous Interactions)☆10Updated this week
- ☆18Aug 28, 2023Updated 3 years ago
- Paste a protein sequence, get an a3m. Borrows AlphaFold DB's precomputed MSAs instead of running a search.☆11Aug 8, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Graph Learning of INTER-protein contacts☆11Feb 20, 2022Updated 4 years ago
- C-library for calculating Solvent Accessible Surface Areas☆209Updated this week
- Joint Protein-Ligand Embedding☆11Oct 3, 2025Updated last year
- These are the famous Uppsala Software Factory programs, rescued into GitHub.☆10Nov 3, 2022Updated 4 years ago
- "Rewriting protein alphabets with language models"☆27Oct 24, 2026Updated 2 weeks ago
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆14Oct 7, 2026Updated last month
- random colab notebooks for biology☆25Aug 23, 2025Updated last year
- ☆11Oct 7, 2025Updated last year
- Fast and accurate protein domain segmentation using Invariant Point Attention☆49May 22, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Neurally-derived Potts models for protein design, inspired by dTERMen☆16Aug 23, 2022Updated 4 years ago
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆19May 6, 2019Updated 7 years ago
- ☆25Aug 6, 2026Updated 3 months ago
- Generate UniProt-based AlphaFold3 JSON including all annotated post-translational modifications☆14Sep 16, 2024Updated 2 years ago
- ☆15Oct 18, 2026Updated 3 weeks ago
- Structural space exploration of AlphaFold DB☆13Oct 8, 2021Updated 5 years ago
- A program fror inter-protein contact prediction from structures of interacting proteins☆22Jun 1, 2024Updated 2 years ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆195Oct 19, 2026Updated 3 weeks ago
- Experiments in protein folding through language modeling☆10Dec 10, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Fast protein structure searching or your money back☆119Apr 13, 2026Updated 6 months ago
- ☆16Feb 13, 2026Updated 8 months ago
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Aug 5, 2021Updated 5 years ago
- Molstar Stories Webapp☆22Oct 28, 2026Updated last week
- scripts to monitor cryo-em jobs☆10Sep 29, 2021Updated 5 years ago
- ☆214Apr 21, 2025Updated last year
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆88Jun 2, 2022Updated 4 years ago