tristanic / pae_to_domainsLinks
Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix
☆35Updated 3 years ago
Alternatives and similar repositories for pae_to_domains
Users that are interested in pae_to_domains are comparing it to the libraries listed below
Sorting:
- ☆37Updated 5 months ago
- ☆30Updated 6 months ago
- Python package to manage protein structures and their annotations☆45Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 8 months ago
- ☆85Updated 3 weeks ago
- Fast and accurate protein structure prediction☆56Updated 10 months ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆58Updated 3 months ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated 2 years ago
- Contact map alignment☆41Updated 4 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- ☆25Updated 2 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆64Updated 4 months ago
- ☆44Updated last year
- Ultra-fast in-silico structure mutation☆35Updated 8 months ago
- ☆31Updated last year
- Graph Network for protein-protein interface including language model features☆33Updated last year
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆38Updated 3 months ago
- ☆54Updated 3 months ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆55Updated 7 months ago
- GTalign, high-performance protein structure alignment, superposition and search☆52Updated 3 months ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆27Updated 2 years ago
- AlphaLink: Integrating crosslinking MS data into OpenFold☆71Updated last year
- ☆47Updated 10 months ago
- Foldy: a web-based platform for interactive protein structure analysis☆26Updated last month
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆34Updated 3 months ago
- Kuhlman Lab Installation of AlphaFold3☆37Updated 2 months ago
- ☆39Updated 4 years ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆43Updated 2 years ago
- ColabFold protocol☆57Updated last year