Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix
☆39Jul 28, 2022Updated 4 years ago
Alternatives and similar repositories for pae_to_domains
Users that are interested in pae_to_domains are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A domain parser for Alphafold models☆49Dec 12, 2023Updated 2 years ago
- scripts to visualise results of alphafold2 and 3 multimer runs☆19May 28, 2024Updated 2 years ago
- A high performance drop-in replacement for Biotite's PDBFile.☆43Jun 21, 2026Updated 2 months ago
- Visualize structure data from Biotite with PyMOL☆26Mar 16, 2025Updated last year
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆14Aug 21, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Julia tools for reading Crystallographic Information Framework (CIF) files and dictionaries☆15Apr 10, 2026Updated 4 months ago
- Converts AlphaFold distograms into distance matrices and saves them into a number of formats☆16Dec 13, 2022Updated 3 years ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆28Aug 9, 2023Updated 3 years ago
- Tutorial files☆12Aug 7, 2024Updated 2 years ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Aug 29, 2026Updated last week
- ☆322Updated this week
- Critical Assessment of Intrinsic Disorder☆18Jul 16, 2026Updated last month
- scripts to monitor cryo-em jobs☆10Sep 29, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- C-library for calculating Solvent Accessible Surface Areas☆205May 31, 2026Updated 3 months ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- ☆16Jan 31, 2019Updated 7 years ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆31Aug 9, 2024Updated 2 years ago
- ☆18Aug 28, 2023Updated 3 years ago
- AlphaLink: Integrating crosslinking MS data into OpenFold☆76Dec 14, 2023Updated 2 years ago
- Repo contains source code of the SurfaceID paper☆29Mar 13, 2024Updated 2 years ago
- "Rewriting protein alphabets with language models"☆26Jun 9, 2026Updated 2 months ago
- Cryo-EM data viewer in napari☆14Dec 1, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated last year
- Graph Learning of INTER-protein contacts☆11Feb 20, 2022Updated 4 years ago
- random colab notebooks for biology☆26Aug 23, 2025Updated last year
- ☆27Feb 16, 2022Updated 4 years ago
- Badly written scripts for making cryoEM easier☆13Dec 15, 2020Updated 5 years ago
- 3D printing data in "Tidy up cryo-EM sample grids with 3D printed tools"☆14Apr 20, 2022Updated 4 years ago
- A program fror inter-protein contact prediction from structures of interacting proteins☆22Jun 1, 2024Updated 2 years ago
- Fast protein structure searching or your money back☆119Apr 13, 2026Updated 4 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆47May 22, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ManifoldEM Python suite☆17Nov 22, 2024Updated last year
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Aug 5, 2021Updated 5 years ago
- This repository contains the installation zip file, user manual, example data, and source code for the PyXlinkViewer plugin for PyMOL v2☆10Jul 3, 2023Updated 3 years ago
- The matching routine for interologs identification based on co-evolution☆11Jul 17, 2018Updated 8 years ago
- ☆12Sep 17, 2024Updated last year
- a bidirectional interface between Dynamo and the Warp-RELION-M pipeline☆21Jul 28, 2023Updated 3 years ago
- https://grasp.ufv.br/☆17Jul 6, 2023Updated 3 years ago