Alternatives and similar repositories for CombFold

Users that are interested in CombFold are comparing it to the libraries listed below

• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆70Updated last year
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆66Updated 3 months ago
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆64Updated last year
• rigdenlab / ABCFold
  Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.
  ☆93Updated last month
• Rappsilber-Laboratory / AlphaLink2
  AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
  ☆58Updated 2 months ago
• Jfeldman34 / AF3Complex
  ☆47Updated 4 months ago
• lcbc-epfl / metal-site-prediction
  ☆41Updated last year
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆36Updated 3 weeks ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆58Updated last month
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆75Updated last month
• AbSciBio / igdesign
  ☆47Updated 9 months ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆84Updated 4 months ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated last year
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆56Updated 8 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆85Updated 2 months ago
• cddlab / alphafold3_tools
  Toolkit for alphafold3 input and output files
  ☆83Updated 3 weeks ago
• samuelmurail / af_analysis
  Analysis of alphafold and colabfold results
  ☆32Updated last month
• jproney / AF2Rank
  ☆113Updated 2 years ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆70Updated this week
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆53Updated 2 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 7 months ago
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)
  ☆59Updated 7 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆43Updated 2 weeks ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆34Updated 7 years ago
• patrickbryant1 / MoLPC
  Modelling of Large Protein Complexes
  ☆37Updated 2 months ago
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆117Updated 6 months ago
• cytokineking / FreeBindCraft
  BindCraft modified to make PyRosetta use and installation optional: no license needed
  ☆91Updated last month
• bene837 / af2seq
  ☆44Updated last year
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated 3 months ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆123Updated 2 weeks ago