Junjie-Zhu / IDPFoldView external linksLinks
Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold
☆26Sep 13, 2024Updated last year
Alternatives and similar repositories for IDPFold
Users that are interested in IDPFold are comparing it to the libraries listed below
Sorting:
- ☆47Apr 16, 2025Updated 10 months ago
- ☆51Jan 2, 2025Updated last year
- Generative diverse protein backbones by protein language model☆34Oct 30, 2025Updated 3 months ago
- bakerlab pymol scripts☆26Feb 6, 2020Updated 6 years ago
- Demos of many Rosetta applications☆22Jun 10, 2025Updated 8 months ago
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆16Updated this week
- ☆23Apr 13, 2025Updated 10 months ago
- ☆67Jan 23, 2026Updated 3 weeks ago
- A convinent tool to visualize AlphaFold 3 prediction results with PyMOL and matplotlib☆19May 20, 2024Updated last year
- ☆70Jul 3, 2024Updated last year
- Implementation of methods to sample from Boltzmann distributions☆20Jan 24, 2023Updated 3 years ago
- Homomer symmetry prediction from protein sequence☆41Mar 13, 2025Updated 11 months ago
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆19Oct 31, 2025Updated 3 months ago
- ☆35Jun 17, 2025Updated 8 months ago
- ☆42Apr 12, 2024Updated last year
- Disordered protein ensemble prediction☆11Dec 22, 2025Updated last month
- A python implementation of pdb2oniom for QM/MM (ONIOM) calculations☆10Oct 2, 2025Updated 4 months ago
- Reaction-Conditioned Virtual Screening of Enzymes☆42Jun 11, 2025Updated 8 months ago
- Benchmarking code accompanying the release of `bioemu`☆54Nov 25, 2025Updated 2 months ago
- [NeurIPS 2024] The implementation for the paper "Geometric Trajectory Diffusion Models".☆34Jul 22, 2025Updated 6 months ago
- Build conformational representations of Intrinsically Disordered Proteins and Regions by a guided sampling of the protein torsion space☆31Dec 18, 2025Updated last month
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆274Dec 10, 2024Updated last year
- Fast and accurate protein domain segmentation using Invariant Point Attention☆46May 22, 2025Updated 8 months ago
- Predicting mutational effects on protein binding from folding energy. ICML 2025.☆40Aug 4, 2025Updated 6 months ago
- a toolbox for the manipulation, modelling and analysis of molecular structures☆27Nov 27, 2025Updated 2 months ago
- STARLING - conSTruction of intrinsicAlly disoRdered proteins ensembles efficientLy vIa multi-dimeNsional Generative models☆19Dec 23, 2025Updated last month
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆53Jan 28, 2026Updated 2 weeks ago
- a universal molecular interaction modeling platform based on AlphaFold3, supporting structure prediction and analysis for various recepto…☆49Nov 20, 2025Updated 2 months ago
- Deep generative modeling of protein structural ensembles☆36Sep 22, 2025Updated 4 months ago
- The official code for "TaxDiff: Taxonomic-Guided Diffusion Model for Protein Sequence Generation"☆74Aug 23, 2024Updated last year
- AlphaLink: Integrating crosslinking MS data into OpenFold☆72Dec 14, 2023Updated 2 years ago
- Generate intrinsically disordered peptide conformations via machine learning☆24May 26, 2024Updated last year
- Code for deep learning guided design of dynamic proteins☆32Jul 16, 2024Updated last year
- Tutorial files☆12Aug 7, 2024Updated last year
- ☆17Dec 23, 2024Updated last year
- An open-source platform for developing protein models beyond AlphaFold.☆12Jul 15, 2025Updated 7 months ago
- Add CMAP parameters into common AMBER prmtop file☆14Sep 12, 2021Updated 4 years ago