Alternatives and similar repositories for Uni-Fold

Users that are interested in Uni-Fold are comparing it to the libraries listed below

• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆561Updated 2 years ago
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆372Updated last year
• biolists / folding_tools
  A collection of *fold* tools
  ☆300Updated 5 months ago
• HeliXonProtein / OmegaFold
  OmegaFold Release Code
  ☆604Updated 3 years ago
• bjing2016 / alphaflow
  AlphaFold Meets Flow Matching for Generating Protein Ensembles
  ☆509Updated 3 months ago
• dptech-corp / Uni-Fold-jax
  Trainable AlphaFold implementation in JAX
  ☆159Updated 3 years ago
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆399Updated 2 years ago
• HannesStark / EquiBind
  EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
  ☆534Updated 11 months ago
• Zuricho / ParallelFold
  Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…
  ☆173Updated last year
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆276Updated 2 years ago
• zrqiao / NeuralPLexer
  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
  ☆319Updated 3 months ago
• luost26 / diffab
  ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
  ☆352Updated 2 years ago
• gjoni / trRosetta
  A package to predict protein inter-residue geometries from sequence data
  ☆220Updated 4 years ago
• jonathanking / sidechainnet
  An all-atom protein structure dataset for machine learning.
  ☆356Updated last year
• baker-laboratory / rf_diffusion_all_atom
  Public RFDiffusionAA repo
  ☆462Updated last year
• dptech-corp / Uni-Dock
  Uni-Dock: a GPU-accelerated molecular docking program
  ☆271Updated last month
• wallnerlab / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆354Updated 2 months ago
• adaptyvbio / ProteinFlow
  Versatile computational pipeline for processing protein structure data for deep learning applications.
  ☆269Updated last year
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆326Updated last year
• dauparas / LigandMPNN
  ☆529Updated 11 months ago
• OATML-Markslab / ProteinGym
  Official repository for the ProteinGym benchmarks
  ☆382Updated last week
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆868Updated last month
• microsoft / AI2BMD
  AI-powered ab initio biomolecular dynamics simulation
  ☆564Updated 11 months ago
• octavian-ganea / equidock_public
  EquiDock: geometric deep learning for fast rigid 3D protein-protein docking
  ☆254Updated 2 years ago
• RosettaCommons / PyRosetta.notebooks
  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
  ☆650Updated last year
• baker-laboratory / RoseTTAFold-All-Atom
  ☆780Updated 7 months ago
• uw-ipd / RoseTTAFold2
  ☆207Updated 8 months ago
• gnina / gnina
  A deep learning framework for molecular docking
  ☆827Updated 3 weeks ago
• rdk / p2rank
  P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.
  ☆380Updated last month
• lightdock / lightdock
  Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
  ☆372Updated 4 months ago