An open-source platform for developing protein models beyond AlphaFold.
☆420Jun 26, 2024Updated 2 years ago
Alternatives and similar repositories for Uni-Fold
Users that are interested in Uni-Fold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- OmegaFold Release Code☆625Dec 12, 2022Updated 3 years ago
- Optimizing AlphaFold Training and Inference on GPU Clusters☆617Jul 16, 2024Updated 2 years ago
- A collection of *fold* tools☆304Aug 8, 2025Updated last year
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,416Dec 16, 2025Updated 7 months ago
- ☆211Apr 21, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Making Protein Design accessible to all via Google Colab!☆927Apr 6, 2026Updated 4 months ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆68Aug 26, 2025Updated 11 months ago
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆425Jul 20, 2026Updated 3 weeks ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆176Dec 24, 2023Updated 2 years ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆379Jun 3, 2024Updated 2 years ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆565Dec 12, 2023Updated 2 years ago
- Making Protein folding accessible to all!☆2,877Updated this week
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆190Oct 7, 2025Updated 10 months ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆179Apr 6, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆218Sep 24, 2024Updated last year
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,280Updated this week
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆420Feb 26, 2026Updated 5 months ago
- Trainable AlphaFold implementation in JAX☆158Aug 6, 2022Updated 4 years ago
- Code for the ProteinMPNN paper☆1,825Aug 14, 2024Updated 2 years ago
- An all-atom protein structure dataset for machine learning.☆366Mar 16, 2024Updated 2 years ago
- Protein hallucination and inpainting with RoseTTAFold☆284Mar 30, 2023Updated 3 years ago
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆173Sep 8, 2024Updated last year
- AlphaLink: Integrating crosslinking MS data into OpenFold☆76Dec 14, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆333Oct 28, 2024Updated last year
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,169Feb 7, 2024Updated 2 years ago
- Compressing protein structures effectively with torsion angles☆195Aug 3, 2026Updated last week
- Code for ColabDock paper☆157May 1, 2025Updated last year
- Implementation for SE(3) diffusion model with application to protein backbone generation☆423Jul 3, 2023Updated 3 years ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆189Apr 21, 2024Updated 2 years ago
- The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.☆183Jun 17, 2023Updated 3 years ago
- Diffusion-based all-atom protein generative model.☆237Aug 27, 2025Updated 11 months ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Jul 25, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆92Sep 25, 2024Updated last year
- EquiDock: geometric deep learning for fast rigid 3D protein-protein docking☆259Sep 22, 2023Updated 2 years ago
- Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design☆705Updated this week
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆368Jun 29, 2023Updated 3 years ago
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- ☆51Sep 25, 2024Updated last year
- ☆319Updated this week