dptech-corp / Uni-Fold

Related projects ⓘ

Alternatives and complementary repositories for Uni-Fold

• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆520Updated 11 months ago
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆333Updated 5 months ago
• biolists / folding_tools
  A collection of *fold* tools
  ☆289Updated 2 months ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆245Updated last year
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆328Updated last year
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆265Updated 3 weeks ago
• adaptyvbio / ProteinFlow
  Versatile computational pipeline for processing protein structure data for deep learning applications.
  ☆242Updated 9 months ago
• baker-laboratory / rf_diffusion_all_atom
  Public RFDiffusionAA repo
  ☆319Updated 4 months ago
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆623Updated 3 weeks ago
• OATML-Markslab / ProteinGym
  Official repository for the ProteinGym benchmarks
  ☆239Updated 2 weeks ago
• bjing2016 / alphaflow
  AlphaFold Meets Flow Matching for Generating Protein Ensembles
  ☆371Updated last month
• zrqiao / NeuralPLexer
  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
  ☆267Updated 7 months ago
• dptech-corp / Uni-Fold-jax
  Trainable AlphaFold implementation in JAX
  ☆159Updated 2 years ago
• dauparas / ProteinMPNN
  Code for the ProteinMPNN paper
  ☆1,034Updated 3 months ago
• dauparas / LigandMPNN
  ☆233Updated 5 months ago
• jonathanking / sidechainnet
  An all-atom protein structure dataset for machine learning.
  ☆339Updated 8 months ago
• Zuricho / ParallelFold
  Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…
  ☆147Updated 8 months ago
• luost26 / diffab
  ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
  ☆281Updated last year
• HeliXonProtein / OmegaFold
  OmegaFold Release Code
  ☆555Updated last year
• HannesStark / EquiBind
  EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
  ☆482Updated last year
• RosettaCommons / PyRosetta.notebooks
  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
  ☆492Updated 3 months ago
• westlake-repl / SaProt
  Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
  ☆354Updated this week
• gjoni / trRosetta
  A package to predict protein inter-residue geometries from sequence data
  ☆206Updated 3 years ago
• nrbennet / dl_binder_design
  ☆248Updated 3 months ago
• YoshitakaMo / localcolabfold
  ColabFold on your local PC
  ☆609Updated 2 weeks ago
• bytedance / Protenix
  A trainable PyTorch reproduction of AlphaFold 3.
  ☆653Updated this week
• baker-laboratory / RoseTTAFold-All-Atom
  ☆649Updated 3 months ago
• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆296Updated last week
• octavian-ganea / equidock_public
  EquiDock: geometric deep learning for fast rigid 3D protein-protein docking
  ☆232Updated last year
• microsoft / AI2BMD
  AI-powered ab initio biomolecular dynamics simulation
  ☆365Updated 2 weeks ago