Scripts to run AlphaFold3, Boltz-2, Chai-1, OpenFold3 & Protenix with MMseqs2 MSAs and custom templates.
☆106Apr 15, 2026Updated 2 weeks ago
Alternatives and similar repositories for ABCFold
Users that are interested in ABCFold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆41Jul 28, 2025Updated 9 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆120Jan 28, 2026Updated 3 months ago
- ☆567Feb 6, 2025Updated last year
- Protein representation and design under a single training scheme☆24Updated this week
- It's a package for evaluation of predicted poses, right?☆76Mar 27, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Toolkit for alphafold3 input and output files☆101Apr 16, 2026Updated 2 weeks ago
- Public Release of ProGen3 family of Models☆107Jul 21, 2025Updated 9 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆78Jan 27, 2026Updated 3 months ago
- Source code and examples for AlphaFold Unmasked☆78Nov 25, 2025Updated 5 months ago
- PoseX: A Molecular Docking Benchmark☆76Mar 23, 2026Updated last month
- ☆137Jun 3, 2025Updated 10 months ago
- Diffusion-based all-atom protein generative model.☆235Aug 27, 2025Updated 8 months ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆174Feb 6, 2026Updated 2 months ago
- Learning the language of protein-protein interactions☆145Apr 14, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆88Dec 3, 2025Updated 4 months ago
- ☆13Mar 16, 2024Updated 2 years ago
- Fast protein backbone generation with SE(3) flow matching.☆324Jul 19, 2024Updated last year
- ☆118Dec 7, 2022Updated 3 years ago
- ☆22Apr 8, 2026Updated 3 weeks ago
- Plugin for folding sequences directly in PyMOL☆119Aug 4, 2025Updated 8 months ago
- A geometric flow matching model for generative protein-ligand docking and affinity prediction. (ISMB 2025)☆136Sep 3, 2025Updated 7 months ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆380Jun 3, 2024Updated last year
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆228Jan 3, 2026Updated 3 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆60May 6, 2024Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆67Feb 2, 2026Updated 2 months ago
- Chai-1, SOTA model for biomolecular structure prediction☆1,926Apr 11, 2026Updated 2 weeks ago
- ☆802May 27, 2025Updated 11 months ago
- ☆92Sep 25, 2024Updated last year
- Folding-Docking-Affinity framework for protein-ligand affinity prediction☆28Mar 20, 2025Updated last year
- A drop-in replacement for Rosetta Relax☆27Jan 30, 2026Updated 2 months ago
- mdml: Deep Learning for Molecular Simulations☆54May 17, 2025Updated 11 months ago
- ☆52Apr 23, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Aligning protein generative models with experimental fitness☆120Mar 12, 2026Updated last month
- Implementation for SE(3) diffusion model with application to protein backbone generation☆419Jul 3, 2023Updated 2 years ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆246Mar 26, 2026Updated last month
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Apr 13, 2026Updated 2 weeks ago
- Input files and binding free energy values from our benchmark with QuantumBind-RBFE☆16Apr 16, 2025Updated last year
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆184Oct 7, 2025Updated 6 months ago
- User friendly and accurate binder design pipeline☆1,080Apr 17, 2026Updated last week