rigdenlab / ABCFoldLinks
Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.
☆94Updated last week
Alternatives and similar repositories for ABCFold
Users that are interested in ABCFold are comparing it to the libraries listed below
Sorting:
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆77Updated 4 months ago
- ☆90Updated last month
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆77Updated 3 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆70Updated last year
- ☆71Updated 7 months ago
- Toolkit for alphafold3 input and output files☆90Updated last month
- Efficient manipulation of protein structures in Python☆60Updated last month
- Active Learning-Assisted Directed Evolution for Protein Engineering☆70Updated 3 weeks ago
- ☆114Updated 2 years ago
- ☆88Updated last year
- BindCraft modified to make PyRosetta use and installation optional: no license needed☆96Updated last month
- Analysis of alphafold and colabfold results☆32Updated last month
- Official repository of EnzymeFlow☆95Updated 11 months ago
- Source code and examples for AlphaFold Unmasked☆75Updated last month
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆96Updated 5 months ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆97Updated 2 years ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆67Updated 4 months ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆139Updated 7 months ago
- ☆81Updated 9 months ago
- ☆44Updated last year
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆165Updated last month
- ☆47Updated 10 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆46Updated last week
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated last year
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆148Updated 2 years ago
- Extension of ThermoMPNN for double mutant predictions☆46Updated last month
- Sidechain conditioning and modeling for full-atom protein sequence design☆126Updated 4 months ago
- AlphaFold-initiated replica exchange protein docking☆84Updated 5 months ago
- ☆49Updated 4 months ago
- Small_molecule_binder_design_use_pseudocycles☆22Updated 11 months ago