Alternatives and similar repositories for data-leakage-ppi-prediction

Users that are interested in data-leakage-ppi-prediction are comparing it to the libraries listed below

• wells-wood-research / PDBench
  PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
  ☆30Updated 2 years ago
• Nucleus2014 / protease-gcnn-pytorch
  ☆21Updated last year
• brennanaba / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆32Updated 2 years ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆44Updated last year
• bwicky / oligomer_hallucination
  ☆36Updated last year
• psipred / ted-tools
  ML toolset for creating TED: The Encyclopedia of Domains
  ☆22Updated 3 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆52Updated 3 months ago
• Profluent-AI / proseLM-public
  Adapting protein language models for structure-conditioned design
  ☆40Updated last year
• Rocklin-Lab / cdna-display-proteolysis-pipeline
  ☆25Updated 2 years ago
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆36Updated last month
• PDBeurope / protein-cluster-conformers
  Clusters protein chains based on CA distance difference
  ☆16Updated 7 months ago
• Rappsilber-Laboratory / AlphaLink2
  AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
  ☆57Updated 3 weeks ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆52Updated last month
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆30Updated 5 months ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆30Updated last year
• hesther / enzymemap
  Python package to atom map, correct and suggest enzymatic reactions
  ☆39Updated last year
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆33Updated 2 years ago
• programmablebio / saltnpeppr
  An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders
  ☆16Updated last year
• haddocking / arctic3d
  Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  ☆31Updated last month
• sokrypton / roscon2024
  Tutorial files
  ☆11Updated last year
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆20Updated 2 months ago
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆34Updated 5 months ago
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆35Updated 10 months ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated 2 months ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 5 years ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆41Updated 3 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 6 months ago
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆78Updated 6 months ago
• SNU-CSSB / RF2-Lite
  ☆30Updated last year
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆38Updated last year