Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'
☆33Jan 8, 2024Updated 2 years ago
Alternatives and similar repositories for data-leakage-ppi-prediction
Users that are interested in data-leakage-ppi-prediction are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dataset and package for working with protein-protein interactions in 3D☆109Apr 28, 2025Updated last year
- ☆16Dec 10, 2024Updated last year
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆25Jul 29, 2026Updated last month
- A web app to convert a PyMOL PSE file or PDB file to a easy to implement NGL.js view that can be implemented easily on any site☆12Nov 12, 2021Updated 4 years ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- SGPPI: structure-aware prediction of protein-protein interactions in rigorous conditions with graph convolutional network☆15Nov 17, 2022Updated 3 years ago
- Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)☆17Sep 30, 2024Updated last year
- ☆20Aug 6, 2019Updated 7 years ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆120Feb 19, 2026Updated 6 months ago
- ☆15Feb 18, 2025Updated last year
- Contrastive learning harmonizing protein language models and natural language models☆44Jun 12, 2024Updated 2 years ago
- LoRA for protein language models☆48Jan 24, 2024Updated 2 years ago
- ☆57Aug 3, 2024Updated 2 years ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆18Sep 10, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆33Jul 28, 2026Updated last month
- A deep learning framework for deubiquitnase-substrate interaction identification☆13Jul 31, 2025Updated last year
- A PyTorch implementation of GCN with mutual attention for protein-protein interaction prediction☆61Aug 7, 2021Updated 5 years ago
- Implementation of the TintiNet architecture for Julia☆17Mar 1, 2024Updated 2 years ago
- Protein representation and design under a single training scheme☆24May 17, 2026Updated 3 months ago
- Metrics for our protein design competitions.☆36Nov 1, 2024Updated last year
- fragbuilder is a tool to create, setup and analyze QM calculations on peptides.☆15Oct 31, 2014Updated 11 years ago
- Pretrained METL models with minimal dependencies☆16Sep 18, 2025Updated 11 months ago
- Domain-PFP is a self-supervised method to predict protein functions from the domains☆13Nov 1, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- E(3) equivariant graph neural network for PPI site prediction☆11Sep 18, 2023Updated 2 years ago
- DataSAIL is a tool to split datasets while reducing information leakage.☆57Updated this week
- Open-source docking pipeline leveraging pairwise statistics☆15Jul 26, 2024Updated 2 years ago
- This repo contains the collection of codes to find designer interfacial mutations☆17Sep 4, 2023Updated 3 years ago
- Code for paper "ToxIBTL: prediction of peptide toxicity based on information bottleneck and transfer learning"☆13Jan 24, 2022Updated 4 years ago
- A collection of tutorials for the python implementation of Dynamical Network Analysis☆15Aug 6, 2025Updated last year
- Protein common interface databases☆10Apr 13, 2019Updated 7 years ago
- ☆35Nov 22, 2023Updated 2 years ago
- Exploring Isoform-specific interactions☆13Jul 23, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Rank homologous protein sequences based on a regressor trained on experimental measures☆16Apr 11, 2025Updated last year
- ☆16Jul 13, 2022Updated 4 years ago
- Public version for DistPepFold☆10Jul 17, 2025Updated last year
- ☆27May 9, 2022Updated 4 years ago
- Pooling by PageRank Token Importance. This is a weighted average pooling method where the weights are derived from the internal attention…☆19Jun 11, 2025Updated last year
- Deep convolutional networks for fold recognition☆22Nov 8, 2019Updated 6 years ago
- Neural relational inference for molecular dynamics simulations☆60May 30, 2023Updated 3 years ago