daisybio / data-leakage-ppi-predictionLinks
Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'
☆25Updated last year
Alternatives and similar repositories for data-leakage-ppi-prediction
Users that are interested in data-leakage-ppi-prediction are comparing it to the libraries listed below
Sorting:
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆30Updated 2 years ago
- Structure prediction of alternative protein conformations☆77Updated 6 months ago
- ☆36Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆51Updated 3 months ago
- ML toolset for creating TED: The Encyclopedia of Domains☆21Updated 3 months ago
- Kuhlman Lab Installation of AlphaFold3☆30Updated 3 months ago
- Ultra-fast in-silico structure mutation☆34Updated 4 months ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆57Updated 3 months ago
- protein structure generation with sparse all-atom denoising models☆35Updated 3 weeks ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆51Updated 3 weeks ago
- ☆20Updated last year
- ☆25Updated 2 years ago
- ☆70Updated 5 months ago
- Parametric Building of de novo Functional Topologies☆44Updated 3 years ago
- Results and data from the pilot round of the Protein Engineering Tournament☆30Updated 5 months ago
- Tool for modelling the CDRs of antibodies☆32Updated 2 years ago
- This repo contains the collection of codes to find designer interfacial mutations☆17Updated last year
- Python package to atom map, correct and suggest enzymatic reactions☆40Updated last year
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Updated 4 years ago
- Source code and examples for AlphaFold Unmasked☆73Updated 3 months ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- Metrics for our protein design competitions.☆35Updated 9 months ago
- ☆32Updated last year
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆30Updated last year
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Updated 11 months ago
- Physical energy function for protein sequence design☆33Updated 2 years ago
- Some scripts that I keep using over and over.☆19Updated last month
- A Unified Approach to Protein Engineering☆42Updated last year
- Fast and accurate protein domain segmentation using Invariant Point Attention☆41Updated 3 months ago
- ☆85Updated 11 months ago