daisybio / data-leakage-ppi-prediction
Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'
☆22Updated last year
Alternatives and similar repositories for data-leakage-ppi-prediction:
Users that are interested in data-leakage-ppi-prediction are comparing it to the libraries listed below
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆27Updated 2 years ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Updated 5 months ago
- ☆61Updated 2 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆34Updated 4 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆41Updated 2 months ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆17Updated 2 months ago
- ☆36Updated last year
- Active Learning-Assisted Directed Evolution for Protein Engineering☆37Updated 3 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆32Updated 8 months ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆26Updated last year
- Metrics for our protein design competitions.☆23Updated 3 months ago
- ☆21Updated last month
- ☆33Updated 5 months ago
- random colab notebooks for biology☆22Updated 5 months ago
- Ultra-fast in-silico structure mutation☆32Updated 2 years ago
- test☆14Updated 4 years ago
- Machine learning-driven antibody design☆54Updated last year
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆15Updated last year
- dMaSIF implementation for google colab☆30Updated last year
- ☆31Updated last year
- ☆30Updated last month
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆27Updated 6 months ago
- Adapting protein language models for structure-conditioned design☆35Updated 6 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆38Updated last week
- This repository implements Gibbs sampling with Graph-based Smoothing☆37Updated 8 months ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆24Updated 7 months ago
- Some scripts that I keep using over and over.☆18Updated last month
- ☆25Updated 2 weeks ago
- Public version for Distance-AF☆20Updated 10 months ago