TurtleTools / alphafold-structural-space

Related projects ⓘ

Alternatives and complementary repositories for alphafold-structural-space

• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆40Updated 9 months ago
• ohuelab / MEGADOCK-on-Colab
  MEGADOCK on Google Colaboratory
  ☆14Updated last year
• haddocking / fcc
  Fraction of Common Contacts Clustering Algorithm for Protein Structures
  ☆26Updated 3 years ago
• JBEI / foldy
  Foldy: a web-based platform for interactive protein structure analysis
  ☆21Updated 7 months ago
• pepamengual / UEP
  ☆9Updated last year
• hkotb / xprotcas
  ☆8Updated last year
• sebastiandaberdaku / AntibodyInterfacePrediction
  software used in paper "Antibody interface prediction with 3D Zernike descriptors and SVM"
  ☆12Updated 3 years ago
• tristanic / pae_to_domains
  Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix
  ☆32Updated 2 years ago
• Rocklin-Lab / cdna-display-proteolysis-pipeline
  ☆21Updated last year
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆25Updated last year
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆18Updated 8 months ago
• DeepGraphLearning / esm-s
  Structure-Informed Protein Language Model
  ☆26Updated 9 months ago
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆18Updated 3 months ago
• Faezov / PDBrenum
  ☆27Updated 6 months ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆24Updated 7 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆25Updated this week
• protddg-bench / protddg-bench
  Scoring methods for predicting the DDG upon protein mutation
  ☆11Updated last year
• Nucleus2014 / protease-gcnn-pytorch
  ☆20Updated last year
• jaaamessszzz / BindingSitesFromFragments
  De novo design of small molecule binding sites into proteins
  ☆13Updated 3 years ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆24Updated last month
• daisybio / data-leakage-ppi-prediction
  Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'
  ☆19Updated 10 months ago
• BioComputingUP / ring-pymol
  This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua
  ☆23Updated 9 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆62Updated 4 months ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆48Updated 3 months ago
• LPDI-EPFL / FunFolDesData
  Rosetta FunFolDes – a general framework for the computational design of functional proteins.
  ☆18Updated 5 years ago
• SNU-CSSB / RF2-Lite
  ☆21Updated 5 months ago
• TurtleTools / portein
  2D portraits of 3D protein structures
  ☆16Updated 9 months ago
• lehner-lab / doubledeepms
  Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…
  ☆19Updated last year
• alirezaomidi / AFM-IDR
  Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"
  ☆13Updated last week
• tommyhuangthu / EvoEF2
  a fast and accurate physical energy function extended from EvoEF for protein sequence design
  ☆25Updated last year