Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
☆168Sep 8, 2024Updated last year
Alternatives and similar repositories for af2complex
Users that are interested in af2complex are comparing it to the libraries listed below
Sorting:
- Open source code for AlphaFold.☆38Dec 24, 2022Updated 3 years ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆367Nov 7, 2025Updated 3 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Mar 22, 2024Updated last year
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆175Oct 7, 2025Updated 4 months ago
- ☆91Sep 25, 2024Updated last year
- EquiDock: geometric deep learning for fast rigid 3D protein-protein docking☆255Sep 22, 2023Updated 2 years ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆98Aug 29, 2023Updated 2 years ago
- AlphaFold-initiated replica exchange protein docking☆87Jun 5, 2025Updated 8 months ago
- MEGADOCK on Google Colaboratory☆20Oct 2, 2023Updated 2 years ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Jul 5, 2025Updated 7 months ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆229Dec 29, 2023Updated 2 years ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆109Feb 19, 2026Updated last week
- Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm☆380Sep 16, 2025Updated 5 months ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆170Dec 24, 2023Updated 2 years ago
- Code for ColabDock paper☆151May 1, 2025Updated 9 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Aug 26, 2024Updated last year
- This repository has been integrated in https://github.com/DeepRank/deeprank2☆147Nov 28, 2023Updated 2 years ago
- An open-source platform for developing protein models beyond AlphaFold.☆413Jun 26, 2024Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Jul 29, 2024Updated last year
- ☆117Dec 7, 2022Updated 3 years ago
- ☆13Dec 5, 2024Updated last year
- Protein hallucination and inpainting with RoseTTAFold☆279Mar 30, 2023Updated 2 years ago
- Source code and examples for AlphaFold Unmasked☆76Nov 25, 2025Updated 3 months ago
- ☆209Apr 21, 2025Updated 10 months ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆375Jun 3, 2024Updated last year
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆32Jan 22, 2026Updated last month
- AlphaLink: Integrating crosslinking MS data into OpenFold☆73Dec 14, 2023Updated 2 years ago
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,169Updated this week
- Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…☆173Feb 25, 2024Updated 2 years ago
- ☆70Feb 13, 2026Updated 2 weeks ago
- Structure prediction of alternative protein conformations☆82Feb 24, 2025Updated last year
- Making Protein Design accessible to all via Google Colab!☆886Dec 8, 2025Updated 2 months ago
- Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design☆664Feb 12, 2026Updated 2 weeks ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆226Aug 7, 2025Updated 6 months ago
- Making Protein folding accessible to all!☆2,641Feb 11, 2026Updated 2 weeks ago
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆405Sep 3, 2023Updated 2 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆328Oct 28, 2024Updated last year
- ☆212Sep 24, 2024Updated last year
- ☆22Nov 26, 2025Updated 3 months ago