Alternatives and similar repositories for AF_Cluster

Users that are interested in AF_Cluster are comparing it to the libraries listed below

• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆108Updated 4 months ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆215Updated 10 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆140Updated last month
• ikalvet / heme_binder_diffusion
  ☆128Updated 7 months ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆171Updated 3 months ago
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆95Updated last year
• jproney / AF2Rank
  ☆107Updated 2 years ago
• jertubiana / ScanNet
  ☆126Updated last year
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆154Updated last year
• Kortemme-Lab / flex_ddG_tutorial
  ☆114Updated 2 years ago
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆122Updated 6 months ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆120Updated 3 weeks ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆112Updated last year
• baker-laboratory / PLACER
  PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
  ☆130Updated 2 months ago
• haddocking / haddock3
  Official repo of the modular BioExcel version of HADDOCK
  ☆158Updated this week
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆137Updated 4 months ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆180Updated 3 weeks ago
• zhanghaicang / carbonmatrix_public
  ☆112Updated last month
• levinthal / Pallatom
  ☆94Updated 7 months ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆120Updated last week
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆92Updated 5 months ago
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆158Updated last year
• colbyford / PyMOLfold
  Plugin for folding sequences directly in PyMOL
  ☆97Updated 3 months ago
• westlake-repl / SaprotHub
  Making Protein Modeling Accessible to All Biologists
  ☆113Updated last week
• Kuhlman-Lab / evopro
  ☆81Updated 2 months ago
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆134Updated last year
• zaixizhang / PocketGen
  PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
  ☆182Updated last month
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆61Updated 2 weeks ago
• ai4protein / Pro-Prime
  ☆62Updated last week