HWaymentSteele / AF_Cluster
Predict multiple protein conformations using sequence clustering and AlphaFold2.
☆152Updated last month
Alternatives and similar repositories for AF_Cluster:
Users that are interested in AF_Cluster are comparing it to the libraries listed below
- Protein folding in Pymol☆108Updated 2 months ago
- Protein-ligand structure prediction☆213Updated 8 months ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆95Updated last year
- ☆119Updated 6 months ago
- A compilation of deep learning methods for protein design☆97Updated 2 years ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆156Updated 2 months ago
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆111Updated last year
- ☆123Updated last year
- Code for ColabDock paper☆137Updated 5 months ago
- ☆100Updated 2 years ago
- ☆107Updated 2 years ago
- Official repo of the modular BioExcel version of HADDOCK☆135Updated this week
- Predict the structure of immune receptor proteins☆133Updated 2 months ago
- Improved antibody structure-based design using inverse folding☆108Updated 3 weeks ago
- Making Protein Modeling Accessible to All Biologists☆106Updated last week
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆112Updated 3 weeks ago
- Masif seed paper repository☆149Updated last year
- In silico directed evolution of peptide binders with AlphaFold☆158Updated 2 months ago
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆111Updated 4 months ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆268Updated 2 months ago
- ☆77Updated last month
- AlphaFold-initiated replica exchange protein docking☆76Updated last month
- Predict the binding affinity of protein-protein complexes from structural data☆122Updated 6 months ago
- A bunch of shell utilities for dealing the silent files☆58Updated 3 weeks ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆133Updated 2 months ago
- ☆111Updated 3 weeks ago
- SurfDock is a Surface-Informed Diffusion Generative Model for Reliable and Accurate Protein-ligand Complex Prediction☆163Updated 3 weeks ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆44Updated last week
- ☆81Updated 6 months ago
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆111Updated last month