Predict multiple protein conformations using sequence clustering and AlphaFold2.
☆194Oct 7, 2025Updated last year
Alternatives and similar repositories for AF_Cluster
Users that are interested in AF_Cluster are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆121Dec 7, 2022Updated 3 years ago
- ☆95Sep 25, 2024Updated 2 years ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆99Aug 29, 2023Updated 3 years ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆73Apr 13, 2026Updated 6 months ago
- ☆75Feb 13, 2026Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆548Mar 22, 2026Updated 7 months ago
- Code for ColabDock paper☆158May 1, 2025Updated last year
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆44May 15, 2024Updated 2 years ago
- Making Protein Design accessible to all via Google Colab!☆948Oct 14, 2026Updated 2 weeks ago
- Compressing protein structures effectively with torsion angles☆199Sep 7, 2026Updated last month
- ☆73Feb 13, 2026Updated 8 months ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆334Oct 28, 2024Updated 2 years ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆64Aug 5, 2026Updated 2 months ago
- protein docking stuff☆58Apr 2, 2026Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆327Oct 19, 2026Updated last week
- Diffusion-based all-atom protein generative model.☆238Aug 27, 2025Updated last year
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆433Feb 26, 2026Updated 8 months ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆182Jun 25, 2026Updated 4 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆279Sep 9, 2026Updated last month
- Homomer symmetry prediction from protein sequence☆46Mar 13, 2025Updated last year
- Fast indexing and search of discontinuous motifs in protein structures☆221Oct 15, 2026Updated 2 weeks ago
- Protein-ligand structure prediction☆242Jul 31, 2025Updated last year
- ☆98Nov 25, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆337Oct 6, 2025Updated last year
- Protein hallucination and inpainting with RoseTTAFold☆284Mar 30, 2023Updated 3 years ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆383Jun 3, 2024Updated 2 years ago
- A collection of *fold* tools☆303Aug 8, 2025Updated last year
- Generative Language Modeling for Antibody Design☆200Jul 20, 2026Updated 3 months ago
- Structure-conditioned masked language modeling for protein sequence design☆75Jan 31, 2024Updated 2 years ago
- ☆214Apr 21, 2025Updated last year
- ☆88Oct 14, 2026Updated 2 weeks ago
- ☆11Mar 28, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Metal and Water prediction☆16Feb 5, 2025Updated last year
- A dependency-free cross-platform swiss army knife for PDB files.☆461Jun 10, 2026Updated 4 months ago
- ☆11Mar 27, 2026Updated 7 months ago
- Public RFDiffusionAA repo☆492Jul 9, 2024Updated 2 years ago
- Modelling protein conformational landscape with Alphafold☆62Oct 1, 2026Updated 3 weeks ago
- Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning☆898Oct 21, 2026Updated last week
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆177Sep 8, 2024Updated 2 years ago