Alternatives and similar repositories for AF_Cluster

Users that are interested in AF_Cluster are comparing it to the libraries listed below

• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆141Updated 2 months ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆109Updated 5 months ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆219Updated 11 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆154Updated 2 years ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆179Updated 5 months ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆144Updated 5 months ago
• ikalvet / heme_binder_diffusion
  ☆133Updated 9 months ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆209Updated last month
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆113Updated last year
• haddocking / haddock3
  Official repo of the modular BioExcel version of HADDOCK
  ☆171Updated this week
• Kortemme-Lab / flex_ddG_tutorial
  ☆117Updated 2 years ago
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆96Updated last year
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆127Updated 2 months ago
• jproney / AF2Rank
  ☆108Updated 2 years ago
• yehlincho / BoltzDesign1
  ☆170Updated last week
• colbyford / PyMOLfold
  Plugin for folding sequences directly in PyMOL
  ☆101Updated last week
• jertubiana / ScanNet
  ☆128Updated 3 weeks ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆83Updated last month
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆152Updated last year
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆134Updated last year
• varun-shanker / structural-evolution
  ☆109Updated last year
• levinthal / Pallatom
  ☆100Updated last month
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆131Updated last week
• uw-ipd / RoseTTAFold2
  ☆195Updated 2 months ago
• bytedance / Protenix-Dock
  An accurate and trainable end-to-end protein-ligand docking framework
  ☆98Updated 3 months ago
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆160Updated last year
• haddocking / prodigy
  Predict the binding affinity of protein-protein complexes from structural data
  ☆138Updated 3 months ago
• Kuhlman-Lab / evopro
  ☆81Updated 3 weeks ago
• ChatMol / gromacs_copilot
  Let LLM run your MDs.
  ☆215Updated 3 months ago