morispi / CONSENTLinks
Scalable long read self-correction and assembly polishing with multiple sequence alignment
☆55Updated last year
Alternatives and similar repositories for CONSENT
Users that are interested in CONSENT are comparing it to the libraries listed below
Sorting:
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Pan-Genomic Matching Statistics☆52Updated last year
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated last week
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆66Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 2 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 5 months ago
- ☆28Updated 3 weeks ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆58Updated 10 months ago
- Call select base modifications in PacBio HiFi reads☆7Updated 4 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- TGS scaffolding☆46Updated 3 years ago
- A tool for Racon polishing of miniasm assemblies☆75Updated this week
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 4 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 2 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 2 months ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- ☆44Updated 8 years ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆58Updated last week
- A local-haplotagging-based small and structural variant caller☆78Updated 3 weeks ago