morispi / CONSENTLinks
Scalable long read self-correction and assembly polishing with multiple sequence alignment
☆55Updated last year
Alternatives and similar repositories for CONSENT
Users that are interested in CONSENT are comparing it to the libraries listed below
Sorting:
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Pan-Genomic Matching Statistics☆53Updated last year
- ⛓ Correct misassemblies using linked AND long reads☆60Updated last year
- ☆81Updated 5 months ago
- 🔗Genome assembly scaffolder using minimizer graphs☆84Updated 10 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 2 years ago
- ☆63Updated last week
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 4 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆88Updated 4 years ago
- Filter SAM file for soft and hard clipped alignments☆51Updated last year
- ☆31Updated last year
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- ☆48Updated last year
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆73Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- UCSC Nanopore☆43Updated 5 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- A local-haplotagging-based small and structural variant caller☆78Updated last week
- catalog for long-read sequencing tools☆32Updated 2 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Structural variant caller☆54Updated 3 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- A simple tool for extracting reads from Oxford Nanopore fast5 files☆26Updated 7 years ago
- ☆47Updated 5 years ago