lh3 / partigLinks
An experimental tool to estimate the similarity between all pairs of contigs
☆35Updated 4 years ago
Alternatives and similar repositories for partig
Users that are interested in partig are comparing it to the libraries listed below
Sorting:
- ☆28Updated 3 months ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Find Unique genomic Regions☆30Updated 3 months ago
- ☆16Updated 4 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 9 months ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 3 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 5 years ago
- ☆26Updated 3 years ago
- Construct a Physical Map from Linked Reads☆18Updated last year
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Updated last year
- REINDEER REad Index for abuNDancE quERy☆58Updated last week
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆20Updated 3 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- ☆45Updated 3 years ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 9 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- ☆15Updated 7 years ago